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The JGI Data Portal: Improving User Experience
… areas of focus and data and computational needs. Over its 23-year history, JGI has produced more than 13 petabytes of data, accessible through the Genome Portal. … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Tracing the Evolution of Shiitake Mushrooms
… Researchers sequenced 11 samples from Asia–Australasia and 13 samples from the Americas to trace the evolution … samples was a global collaboration that brought together 39 researchers from eight different countries. Genome and … by the NSF awards DEB- 1456588 to D.H. and DEB-1442113 to A.R., the Department of Energy award 0000238431 to …
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Charting Progress toward Professional Goals
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First Monoploid Reference Sequence of Sugarcane
… as a reference. The final sugarcane sequence generated is 382 Mb; 25,316 protein-coding gene models were predicted with more than … U.S. Department of Energy under Contract No. DE-AC02-05CH11231. …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… project in the JGI-UC Merced Internship Program. In 2023, Shayna Bennett, a UC Merced graduate student in Carolin … the National Science Foundation (NSF) under grant DEB-1442348. The work (proposal:  https://doi.org/10.46936/10.25585/60000936 ) conducted by the U.S. Department of …
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Cultivating Symbiotic Antarctic Microbes
… outlined by JGI scientists and their collaborators in 2013. While most DPANN lineages are predicted symbionts, the … and the Australian Antarctic Science program (project 4031). The work conducted by the US Department of Energy Joint … US Department of Energy under contract no. DE-AC02-05CH11231. S.E. was supported by the EMBO Long-Term Fellowship ALTF …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… with genomic DNA samples from Ruminococcus flavefaciens (XPD3002). With that sample, the Salk Institute team was able to …
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Triggering Morel Fruiting
… China, and a wild black morel strain M. importuna CCBAS932 from the forests of France, were sequenced and annotated … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… able to assemble ~75% of the Olpidium genome and retrieve ~300 markers for phylogenetic reconstruction . We were also … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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JGI@25: The Little Alga That Could
… a partial sequence of Chlamydomonas reinhardtii in 2003; then in 2007 the full genome was sequenced and published … that those sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The … that in the original strain, a protein called RECQ3 helicase is entirely deleted, potentially resulting in …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… Patterns of Adaptive Evolution . Mol Biol Evol. 2022 Feb 3;39(2):msab372.doi: 10.1093/molbev/msab372.   Byline: Ashleigh Papp …
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