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The JGI Data Portal: Improving User Experience
… areas of focus and data and computational needs. Over its 23-year history, JGI has produced more than 13 petabytes of … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Tracing the Evolution of Shiitake Mushrooms
… from around the world. By complete sequencing of 24 new mushroom genomes, and assembling genomes from 60 … of Lentinula species.The Lentinula genus diverged roughly 28 million years ago, when the largest mammal … supported by the NSF awards DEB- 1456588 to D.H. and DEB-1442113 to A.R., the Department of Energy award 0000238431 to …
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Charting Progress toward Professional Goals
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First Monoploid Reference Sequence of Sugarcane
… as a reference. The final sugarcane sequence generated is 382 Mb; 25,316 protein-coding gene models were predicted with more … in sorghum. Based in part on these positive results, in 2017, JGI approved a CSP proposal from the international … of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231. …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… summer project in the JGI-UC Merced Internship Program. In 2023, Shayna Bennett, a UC Merced graduate student in Carolin … by the National Science Foundation (NSF) under grant DEB-1442348. The work (proposal:  https://doi.org/10.46936/10.25585/60000936 ) conducted by the U.S. Department of Energy …
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Cultivating Symbiotic Antarctic Microbes
… to that of a free-living organism. First discovered in 2011, Nanohaloarchaea are part of the DPANN (Diapherotrites, … outlined by JGI scientists and their collaborators in 2013. While most DPANN lineages are predicted symbionts, the … was supported by the Australian Research Council (DP150100244) and the Australian Antarctic Science program (project …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that …
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Triggering Morel Fruiting
… assimilated carbon into the soil, reducing the amount of CO2 emissions from decaying leaves and woods into the … China, and a wild black morel strain M. importuna CCBAS932 from the forests of France, were sequenced and annotated … woods above forest soils. This is important to decrease CO2 emissions from decaying leaves and woods into the …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of … led to the work published in Scientific Reports . Before 2006, Olpidium was one of the many obscure fungi of … at the time. Following the publication of their paper in 2011, Dr. Sekimoto from University of British Columbia and …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a colored-in page of that book. Published online September 28, 2022, in Cell , a team led by researchers at Tel Aviv … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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JGI@25: The Little Alga That Could
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… in this publication during her summer internship in 2018. She selected one of the projects posted by JGI fungal … a virtual four-day data carpentry workshop for the incoming 2021 JGI-UC Merced interns to help familiarize incoming …
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