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The JGI Data Portal: Improving User Experience
… needs. Over its 23-year history, JGI has produced more than 13 petabytes of data, accessible through the Genome Portal. … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Tracing the Evolution of Shiitake Mushrooms
… atmospheric carbon dioxide.  Summary Researchers sequenced 11 samples from Asia–Australasia and 13 samples from the Americas to trace the evolution … This research was supported by the NSF awards DEB- 1456588 to D.H. and DEB-1442113 to A.R., the Department of …
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Charting Progress toward Professional Goals
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First Monoploid Reference Sequence of Sugarcane
… modern sugarcane cultivars are hybrids, each with more than 100 chromosomes; assembling a sugarcane genome is incredibly complex given its estimated size of 10 billion bases (more than three times the size of the … The final sugarcane sequence generated is 382 Mb; 25,316 protein-coding gene models were predicted with more than …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… of conifer needle microbiomes across six sites spanning a 1000km section of the Rocky Mountains. This represents the … by the National Science Foundation (NSF) under grant DEB-1442348. The work (proposal:  https://doi.org/10.46936/10.25585/60000936 ) conducted by the U.S. …
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Cultivating Symbiotic Antarctic Microbes
… to that of a free-living organism. First discovered in 2011, Nanohaloarchaea are part of the DPANN (Diapherotrites, … outlined by JGI scientists and their collaborators in 2013. While most DPANN lineages are predicted symbionts, the … work was supported by the Australian Research Council (DP150100244) and the Australian Antarctic Science program …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… as well as efficient engineering of biofuels. Since 2010, the JGI has partnered with researchers around the world to map out genomes of rumen microbes. In 2018, through a JGI Community Science Program proposal that … researchers put together what they called the Hungate1000, a catalog of 410 rumen microbe genomes. The project …
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Triggering Morel Fruiting
… from an external source.  The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic … fruiting bodies of morel in walk-in growth chambers in 1980s. Unfortunately, he died suddenly, and his patent has … in morel, a cultivable black morel strain M. importuna SCYDJ1-A1 from Sichuan Province, China, and a wild black morel …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… to terrestrial habitats. The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic … at the time. Following the publication of their paper in 2011, Dr. Sekimoto from University of British Columbia and Dr. … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… resulted from a three-way collaboration that began in 2019, recalled Uri Neri of Tel Aviv University, one of the … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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JGI@25: The Little Alga That Could
… specific algae. The reference genome is cited in roughly 10% of all since-released publications on green algae. “The …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… in this publication during her summer internship in 2018. She selected one of the projects posted by JGI fungal … four-day data carpentry workshop for the incoming 2021 JGI-UC Merced interns to help familiarize incoming … Evolution . Mol Biol Evol. 2022 Feb 3;39(2):msab372.doi: 10.1093/molbev/msab372.   Byline: Ashleigh Papp …
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