Results

Large-scale genomic analyses with machine learning uncover predictive patterns associated with fungal phytopathogenic lifestyles and traits
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Viral niche-partitioning: Comparative genomics of giant viruses across environmental gradients in a High Arctic freshwater-saltwater lake
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Genome and transcriptome analysis of the lignite-degrading Trichoderma cf. simile WF8 strain highlights potential degradation mechanisms
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Tunturi virus isolates and metagenome-assembled viral genomes provide insights into the virome of Acidobacteriota in Arctic tundra soils
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Draft genomes and assemblies of the ectomycorrhizal basidiomycetes Scleroderma citrinum hr and S. yunnanense jo associated with chestnut trees
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An RNA ligase partner for the prokaryotic protein-only RNase P: insights into the functional diversity of RNase P from genome mining
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… year, the JGI team reported the first closed and finished genome derived from an uncultured bacterial single cell – a … oil plume from Deepwater Horizon oil spill led to a draft genome of the first deep-sea, oil-eating bacterium from a … cell (seen here in a glass capillary), researchers sequenced and assembled the first complete genome of an …
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DAP-seq Drives Robust Mapping of Gene Regulation
… to technical limitations and the sheer complexity of plant genomes. Now, with improvements to DNA Affinity Purification … paper and Technical Implementation Lead at the DOE Joint Genome Institute (JGI), a DOE Office of Science User … of where those binding sites are in the genome — those sequences are moving around, disappearing and appearing in …
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Emiley Eloe-Fadrosh
… training in human microbiome research at the Institute for Genome Sciences at the University of Maryland School of … Institution of Oceanography. She stepped into the Metagenome Program Lead position in 2017. She also leads the … users with questions on how to partner with the Metagenome Science Program on their research are encouraged to …
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PhycoCosm Tutorial
… more about PhycoCosm, the largest interactive collection of sequenced algal genomes, omics data and comparative analysis tools developed by the Joint Genome Institute (JGI), a US Department of Energy Office of …
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Cataloging the Microbes that Manage the Health of River Systems
… Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds … program at Pacific Northwest National Laboratory. The JGI sequenced over 1,000 metagenomes and established standardized sequencing protocols so …
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A User-Centered Approach to Accessing JGI Data
… metadata criteria. Wilson said that the Data Portal and  Genome Portal will continue to run in parallel for now. Eventually, he added, the Genome Portal will be retired once the same features are … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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