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Krishna is responsible for the design and maintenance of the Integrated Microbial Genomes (IMG) data warehouse, and integration of genomic and metagenomic data with transcriptomics and …

In honor of the JGI's 25th anniversary in 2022, we have … Beginning in the early 2000s , these environmental metagenomes began to offer a window into viral existence. Along … the world, finding over 125,000 partial and complete viral genomes. That study multiplied the number of known viral …

University of Florida, working with Valérie de Crécy-Lagard on using comparative genomics to predict gene function in … user capability between the JGI and Molecular Foundry for genome-encoded biomaterial discovery, design, and … CE, Merchant SS. (2021) Widespread polycistronic gene expression in green algae. PNAS  118 (7) e2017714118 Foflonker …

Marcel is in charge of several production pipelines (gene calling, functional annotation and methylomics) that run on microbial genomes and metagenomes. He also works on automating intra-department data …

… breadth of algal diversity, the numbers of sequenced algal genomes, and the quality of those genomes, is rising. The purpose of this Workshop is to illustrate the expansion of this field and bring it to the attention of the wider …

Uri Neri is a computational biologist who spends his days wrangling viral genomes and occasionally remembering to document his code. At JGI, he develops …

… more about MycoCosm, a data portal with over 2,000 fungal genomes and multi-omics datasets, equipped with interactive … tools for comparative genomics and community annotation. Presented by Igor Grigoriev, Steven Mondo, Steven Ahrendt and Sajeet Haridas. …

A quick snippet on Antonio Camargo and Simon Roux, a few of the JGI researchers … software that finds plasmids and viruses within microbial genomes. As mobile genetic elements like viruses spread …

… plants and how they adapt to their ever-changing environments better? We could unlock new innovations to drive more productive food, medicine, and bioenergy crops. But most available genomes are from narrow swaths of the plant tree of life. …

JGI's Simon Roux describes the structure and content of the IMG/VR v3 … the latest release of IMG database dedicated to viral genomes assembled from metagenomes. He also demonstrates briefly how to leverage novel …

… here The workshop is addressed to students and professionals of biology, biomedical research, the health sciences … related fields who are interested in learning and sharing concepts, tools and research results in genomics, … devoted to training in the use of the Integrated Microbial Genomes & Microbiomes (IMG/M) system, presented by Natalia …

Congratulations to the 2023 Highly Cited Researchers from the … were all instrumental in the development of the Novel Metagenome Protein Families (NMPF) Catalog . Published in the … He was also senior author on a study which identified new genomes highlighting the diversity of white rot fungi in the …