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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… a team has comprehensively described host-virus dynamics in a microbial mat. The Science In microbial mats, communities of microorganisms live among viruses that infect them. But … This work,  recently published in  The ISME Journal , by contrast, relied on methods that eschew culturing, …
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Tracing the Evolution of Shiitake Mushrooms
New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get … a  genomic look at Lentinula samples from around the world. By complete sequencing of 24 new mushroom genomes, and …
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Danielle Goudeau
Danielle operates the single-cell genomics pipeline for JGI collaborators. This … combines custom flow cytometric analysis, cell sorting, genome amplification, PCR screening, and 16S sequencing. She … novel flow cytometry protocols for targeted recovery of specific microbes. …
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I-Min (Amy) Chen
Dr. I-Min A. Chen received her Ph.D. in Computer Science. Her … data modeling, and biological data management. She was one of the co-authors and key developers of the Object-Protocol … data management infrastructure of the Integrated Microbial Genomes (IMG) family of systems. Before joining LBNL in … in an Academic Setting, SSDBM 14, July 2014 … Selected Publications …
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Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1T), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov.,
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Whole Genome Analyses Suggests that Burkholderia sensu lato Contains Two Additional Novel Genera (Mycetohabitans gen. nov., and Trinickia gen. nov.): Implications for the Evolution of Diazotrophy and Nodulation in the Burkholderiaceae
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Panel Discussion: Launching & Sustaining Startups in Synthetic Biology
Program presents… Eyes on the Prize – Launching & Sustaining Startups in Synthetic Biology Who’s … – 5:30 pm 3:00 pm – 4:15 pm: Panel discussion, Q&A followed by: 4:15 pm – 5:30 pm: Hosted Hoppy Hour @ Calicraft … Johnston for followup questions.     … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
A nuanced understanding of peat moss drives insight into carbon storage   The … to the atmosphere. Peat bogs also serve the ecosystem by minimizing flood risks and filtering water. Peat formed …
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Progress Reports: 2002–2020
Click the cards below to view downloadable pdfs of previous Progress Reports from the Joint Genome Institute.  … FY20 Progress Report … FY19 Progress …
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Exploring Polymorphisms Created by Transposable Elements
My project at the Joint Genome Institute (JGI) was to measure the polymorphisms that transposable elements (TEs) contributed to in the grass model species Brachypodium hybridum . …
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Marine Microbe Contains Multitudes
A deep dive into microbial genomics reveals one bacterial species is made of four ecologically distinct groups with different … twilight zone, to the continuous pressure of the dark abyss, 4000 m (2.5 miles) deep. Scientists have wondered, how …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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