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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
Laboratory, and the HudsonAlpha Institute for Biotechnology sequenced sphagnum  genomes from plants selected by a team … and others that preferred the hollows. Those genome sequences showed not only that the sex of a sphagnum plant …
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The Case for Conservation
… with a complex genome . Now, high-quality reference genome sequences of the male and female plants, each representing a … comes from finally having an answer to the question, “Why bother keeping this?” For Stuart McDaniel’s lab at the … Pangea. McDaniel’s lab continues to work on the enigma of why the ancient moss sex chromosomes continue to evolve so …
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JGI@25: Studying Sorghum’s Survival Skills
… that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental … but other important crops as well. In 2009, the JGI sequenced and analyzed the first reference genome for … for biofuel production, John Mullet (Texas A & M and Great Lakes Bioenergy Research Center) and his team set out to …
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Complete genome sequence of the moderately thermophilic mineral-sulfide-oxidizing firmicute Sulfobacillus acidophilus type strain (NALT)
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental … candidate bioenergy feedstock crop. In 2018, the JGI had sequenced and assembled the genomes of two varieties of a … of Texas at Austin produced a high-quality reference sequence of the complex switchgrass genome. The reference …
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Taking Stock of the Known and Unknown Microbial Space
… genomic biodiversity. Using publicly available genome sequence data generated over the past three decades, their … group. “Turns out that despite all the genomes we've sequenced, we've only scratched the surface.” The study, … a census of publicly available bacterial and archaeal sequences. Kyrpides heads the JGI’s Microbiome Data Science …
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Creating an Energy Market for Miscanthus
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… mentor Bryce Foster, Benchmarking Bioinformatics Tools for Sequence Similarity Searching Morgan Lavenstein Bendall and … extremophile protists from a hypersaline alkaline lake in California. Sandra Hernandez Gonzalez : Out of this … working on genomics data for a very long time, and it’s great to see how far the field has come from the early …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… so there was quite a bit of resistance to use resources to sequence it,” Patrinos said. After many more meetings and … mostly focused around how to best work together to achieve great success. “For the most difficult challenges, no one … idea was to put together a ‘Best of the Best’ genome sequence list, which I found utterly frustrating and …
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Overview of the Genomes OnLine Database (GOLD)
… gives an overview of the JGI's Genomes OnLine Database and why curated metadata matters. …
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Hiroshi Otani
… is particularly interested in understanding how, when and why microbes decide to produce which metabolites. … BS, …
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JGI@25: The Little Alga That Could
… that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental … sustainable biofuel production. The JGI published a partial sequence of Chlamydomonas reinhardtii in 2003; then in 2007 the full genome was sequenced and published in the journal Science . At the …
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