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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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Relationships between fluid mixing, biodiversity, and chemosynthetic primary productivity in Yellowstone hot springs
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Accelerating Metagenomics Discoveries with Deep Learning
… of proteins in order to conduct more efficient protein sequence alignments. He also aims to detect structural … Lab’s Biological Systems and Engineering), to assign microbial taxa (Andrew Tritt of CRD and, independently, Ying … Deep learning algorithms can vectorize faces… … so, why not proteins?         …
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Complete Genome Sequences for the Anaerobic, Extremely Thermophilic Plant Biomass-Degrading Bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensensis, and
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High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7T, and emended description of the genus Halotalea
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Webinar: PhycoCosm Tutorial
… JGI’s  PhycoCosm data portal , an interactive collection of sequenced algal genomes, omics data and comparative analysis tools. Questions and Answers 1.  Q(uestion): Why would your Tree ever differ from NCBI Taxonomy? A(nswer): If you find that our trees are …
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Niche differentiation of bacteria and fungi in carbon and nitrogen cycling of different habitats in a temperate coniferous forest: A metaproteomic approach
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and biochemically characterized at … was made possible by mining the datasets in the Integrated Microbial Genomes and Microbiomes (IMG/M) suite of tools … Institute (JGI), a DOE Office of Science User Facility. The sequences were then biochemically characterized by a team …
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The Case for Conservation
… with a complex genome . Now, high-quality reference genome sequences of the male and female plants, each representing a … learn the value of their item. Part of that pleasure comes from finally having an answer to the question, “Why bother keeping this?” For Stuart McDaniel’s lab at the …
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Diversity and function of methyl-coenzyme M reductase-encoding archaea in Yellowstone hot springs revealed by metagenomics and mesocosm experiments
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An Automated Tool for Assessing Virus Data Quality
… CheckV can help researchers assess virus sequence fragments and data quality. The Science Through … and more virus sequences are being recovered and identified from environmental samples (metagenomes). However, the … the genomes of these viruses and associate them with their microbial hosts. However, assembling viral genomes from …
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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
… and developing RNA barcoding systems to optimize microbial bioreactors. This genomic research creates new … for biomanufacturing, from industrial enzymes discovered in extreme environments to engineered microbiomes that … the research consortium aims to generate over a terabase of sequence. “We are thrilled to support this year’s CSP …
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