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Application of Long Sequence Reads To Improve Genomes for Clostridium thermocellum AD2, Clostridium thermocellum LQRI, and Pelosinus fermentans R7
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Scaling High‐Resolution Soil Organic Matter Composition to Improve Predictions of Potential Soil Respiration Across the Continental United States
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Kanwar Singh
… their single cell samples using our high throughput pipeline. He also explores new methods for creating sequencing libraries and optimizing various …
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Improved genome assembly and evidence-based global gene model set for the chordate Ciona intestinalis: new insight into intron and operon populations
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Danielle Goudeau
Danielle operates the single-cell genomics pipeline for JGI collaborators. This work combines custom flow … She also develops novel flow cytometry protocols for targeted recovery of specific microbes. …
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Trichoderma harzianum transcriptome in response to cadmium exposure
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Jeremy Schmutz
Genome Institute dates back to 1997, when he was working for the Stanford Human Genome Center, now the HudsonAlpha … Institute for Biotechnology. There he constructed the pipelines for directed finishing and co-led the team that … project in 2003, he developed sequencing, assembly, and improvement strategies for de novo sequencing of eukaryotic …
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Permanent Improved High-Quality Draft Genome Sequence of Nocardia casuarinae Strain BMG51109, an Endophyte of Actinorhizal Root Nodules of Casuarina glauca
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Benjamin Cole
… plant roots, focusing on genetic components required for effective colonization. In addition, Dr. Cole is … characterization technologies (scRNA-seq, Spatial Transcriptomics). … University of California, San Diego (PhD, 2011) Rensselaer Polytechnic …
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Comparative genomics of the genus Desulfitobacterium
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… a chemical and biological engineer at the University of California Santa Barbara. So plants don’t break down without a … that biomass could serve as the starting material for a wide range of fuels and chemicals. To get to that … quest to break down plants.  In 2016, her team leveraged transcriptomics and other assays to identify and test …
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Revealing the transcriptomic complexity of switchgrass by PacBio long-read sequencing
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