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FICUS-NERSC/KBASE
… The mission of the Joint Genome Institute is to serve the scientific … relevant bioenergy and environmental problems.  The mission of the National Energy Research Scientific Computing Center … ( NERSC ) is to accelerate scientific discovery at the DOE Office of Science through high performance computing (HPC) …
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DAP-seq Drives Robust Mapping of Gene Regulation
… Multi-species assays yield an unprecedented view of plant evolution and adaptation.    Understanding how … behind a city’s power grid. Just as the flow of electricity controls when and where lights turn on or machines start … DAP-seq method overcame some of these challenges by using  in vitro -expressed TFs and fragmented genomic DNA, …
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Webinar: MycoCosm Tutorial
… JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics data and comparative … While are still working on finalizing the tree and related publication the tree is still in development and not … of the portal. 14.  Q: Has there been any interest in using JBrowse / JB2  for genomic views ( e.g.,: …
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A User-Centered Approach to Accessing JGI Data
… through the plant portal  Phytozome . Now the portal offers a way for users to more easily access public data … requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. … use of our search API. They have expressed an interest in using this to find files based on file metadata criteria. …
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Comparative Genomics Using the Integrated Microbial Genomes and Microbiomes (IMG/M) System: A Deinococcus Use Case
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JGI Portals
… expertise and infrastructure enable a broad community of scientists and engineers to leverage our data to develop new algorithms, models and tools in support of DOE mission priorities. Data discoverability and … the JGI will move to a new login service, requiring the use of an ORCID account with two-factor authentication enabled …
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SoyDB: a knowledge database of soybean transcription factors
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A Recommendation for Naming Transcription Factor Proteins in the Grasses
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TRIMER: Transcription Regulation Integrated with Metabolic Regulation
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Transcriptional Responses to Priority Effects in Nectar Yeast
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A Sorghum Pangenome Opens More Doors to Discovery
… Leveraging decades of technological development, dozens of reference genomes … a gene that traces domestication, SHATTERING1 . This gene controls whether a plant keeps its seeds attached when … Development (USAID) also supported the work.   Publication:  Morris, G.P., Harder, A.M., Healey, A.L.  et …
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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national … at Lawrence Berkeley National Laboratory. The JGI consists of 225 researchers and support staff in the Integrative … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a …
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