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… Harnessing BER-funded data resources, researchers built an interactive and comprehensive database of fermentative … The Science Most organisms use oxygen to convert food into energy. However, in environments with little or no … by the United States Department of Agriculture National Institute of Food and Agriculture grant 2018-67015-27495, …

… enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell is key to interrogating what genes … biology experiments. A recent special issue of the journal Synthetic Biology puts the spotlight on JGI’s DNA … more than 10 papers, including two Nature Plants publications, in five years, have come out of the …

… Highlighting the latest interactive version of the JGI’s plant data portal. On … current, and only, version of Phytozome accessible as an interactive website. Since May 2019, v12 has not had any … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …

… An article summarizing the field of viral metagenomics, authored by JGI … and  Nikos Kyrpides , was  recently published in the journal  Annual Review of Biomedical Data Science . The … ways to study such viruses is by sequencing the bulk DNA or RNA contained in a sample that has been collected from any …

… Tracing gene regulatory networks in the model fungus  Neurospora crassa . The Science A team … Neurospora crassa, and to identify and decide on the order in which this fungus breaks down plant cell wall materials … We acknowledge the use of deletion strains generated by Grant P01 GM-068087 “Functional Analysis of …

… common set of metadata. For Steve Wilson, JGI’s Systems Engineering group lead, the Data Portal reflects a structural shift … requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …

… (BGCs.) As reported in the recent Database issue of the journal Nucleic Acids Research , the Secondary Metabolism … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence … commonly used sequence analysis tools is a means of expediting BGC and biosynthesis research.  Summary Over the …

… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … Glycine max on Phytozome …

… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our … bean. That work was published online June 8, 2014 in the journal Nature Genetics . “Common beans are a major societal …

… for survival, may now be easier to characterize following a proof-of-concept study in which researchers paired … Palindromic Repeats) is the leading tool for accurately editing genomes, its effectiveness has historically been … transplanting of these BGCs from one organism into an alternate host via a landing pad that consists of a cre …

… Maize produces a family of compounds that protects it against infections — using surprisingly few enzymes. The Science … differences among mutant maize strains, deploying gene editing to knock out four critical zealexin pathway genes. … sesquiterpenoids, National Science Foundation Plant-Biotic Interactions Program (grant no. 1758976 to E.S. and P.Z.) …

… The JGI is leveraging its current partnerships to offer new capabilities and … different organizations is discoverable and accessible. Linking the resources of powerful institutions like the JGI, … (ESNet), the JGI has unique access to both expertise and infrastructure to facilitate these efforts. Particular areas …