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… expertise and infrastructure enable a broad community of scientists and engineers to leverage our data to develop new algorithms, models and tools in support of DOE mission priorities. Data discoverability and … Notices Data Portal files will be inaccessible July 22–July 24 for computing upgrades . We regret any …

… processes for the first time. By collecting data from 27 different poplar ( Populus trichocarpa ) trees, as well … data set will help identify how different elements of the ecosystem interact and respond to changes in the … streambanks, wildlife habitats and water-quality regulation. Focusing on the rhizosphere and interactions …

… his backyard in Tennessee — the birds are chirping and a soft breeze ripples through the trees in his backyard. … When Lawrence embarked on his PhD program at UC Merced in 2013, this field was just beginning to develop and expand … fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial …

… Journal publication caps JGI pilot project with fledgling Florida … school scientists. The Florida Everglades evokes images of fanboats skimming over swamps, while alligators peer … ranging from wetlands to tree islands to cattails. In 2018, the US Department of Energy (DOE) Joint Genome …

… researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use … process called fermentation. To better understand the range of bacteria and archaea that rely on this form of metabolism, researchers recently compiled a list of with …

… JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics data and comparative … ) on PhycoCosm tree with several sequenced genomes. 2.  Q: How exactly EcoGroups are built? A: EcoGroups are … While are still working on finalizing the tree and related publication the tree is still in development and not …

… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … these gaps of knowledge. In a study published November 11, 2022, in Cell Genomics , the team focused on Actinobacteria … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …

… user engagement. The Science In addition to the core set of "primary metabolites"—chemical compounds shared by most … growth and reproduction—most organisms produce a set of "secondary metabolites," chemical compounds that often … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence …

… viruses outnumber the microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome … between viruses and their host microbes impact the regulation of global nutrient cycles. The JGI’s latest … metagenome-assembled viral genomes ( Nature Biotechnology , 2021), geNomad , a tool for identifying mobile genetic …