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… prediction for metagenome-derived viruses of archaea and bacteria ( PLoS Biol , 2023). These tools have significantly … genomes and their interactions with microbial hosts. The second project, “ A consortium facilitation, coordination, … data portal, which will include a database for comparative analysis of all the Human viruses. Kyrpides …

… Grigoriev , Plant & Animal Science category Plant Program Library Construction Group Lead Jane Grimwood (at … categories Microbial Systems research group lead and User Programs Deputy Susannah Tringe, Cross-Field category …

… reductase system, researchers could open avenues for using bacteria to produce ethylene and more.  Microbes excel at … with understanding enabled by Basic Energy Sciences (BES) programs, they were able to multiply the insights that each … The structure along with EPR spectroscopy supported a second catalytic metallocofactor as  seen with nitrogenase …

… Science Program Head as well as our Deputy of User Programs. Click to learn more about the program's areas of … The Deputy of User Programs provides direction, leadership and oversight for all of the JGI user programs, including the Community Science Program and …

… developed chemiluminescent biosensors shed light on how bacteria function and colonize diverse environments. The … enables researchers to directly measure cyclic di-GMP levels in environmental samples or clinical isolates. As … the biosensors are not hindered by autofluorescence, the library was able to be quickly screened for biosensor …

… lead the Genome Biology Program and the development of the comparative analysis platforms for microbial genomes and … group is developing novel methods for enabling large-scale comparative analysis, as well as mining and visualization of … of the global RNA virome reveals diverse clades of bacteriophages. Cell . 185(21):4023-4037 Nayfach S, et al. …

… all five cotton lineages and of cotton D are available for comparative analysis on JGI’s plant data portal  Phytozome , … Jeffrey Chen, John T. Lovell and Avinash Sreedasyam). The comparative analysis of the five cotton genomes identified …

… by adding tagged transcription factors to a genomic DNA library. “It’s an innovative way to rapidly capture the … through multiDAP, which allows researchers to conduct comparative analyses across the genomes of multiple species … JGI’s Community Science Program (CSP) focuses on a fungal comparative ENCODE project known as FUNCODE. “We noticed a …

… genome analysis, sequence-based genetic methods, and comparative developmental biology. In addition to this …

… How much DNA is needed for “regular” vs the ultra-low input library creation protocols for PacBio? A(nswer):  Regular … without pooling, which yields ~ 180 Gb of data per library. Q: How much DNA/coverage is required for DNA … the low-input protocol involves PCR amplification of the library. 6mA and 4mC (~50x depth), 5mC (~250x depth …