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A Grass Model to Help Improve Giant Miscanthus
… The Science A reference genome sequence and genomic toolkit for the perennial grass Miscanthus sinensis has been … allows Miscanthus to both inform and benefit from breeding programs of related candidate bioenergy feedstock crops such … to novel traits. M. sinensis is a tetraploid, with four sets of chromosomes; the study showed that these sets …
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A Sorghum Pangenome Opens More Doors to Discovery
… and thousands of resequenced sorghum varieties, a resource for breeders and researchers to harness the traits … benefitted from sequencing resources as part of the Community Science Program of the U.S. Department of Energy … of Energy, the Gates Foundation, the Advanced Research Projects Agency-Energy (ARPA-E) and the United States Agency …
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A Collaboration to Improve Plant Genome Annotations Across Species
… JGI Plant Gene Atlas is a huge updateable transcriptome resource spanning diverse plant species. It was developed to … Centralized databases with large-scale transcriptome projects such as Expression Atlas and PPRD could help with … keep updating the Gene Atlas with curated datasets from CSP projects and aim to improve plant gene function …
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Fungus Fuels Tree Growth
… (JGI), a DOE Office of Science User Facility, through its  Community Science Program in order to get  M. elongata and  I. europaea  … as secreted proteins. However,  M. elongata  seems to encourage the plant to have leakier cell walls and weaker … 01 to F. Martin), JGI Community sequencing program project (CSP570, DE-AC02-05CH11231), and National Science Foundation …
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JGI Pitches 2022 Visiting Faculty Program Collaborations
…   On November 3, 2021, the JGI and the Workforce Development & Education department of Lawrence … the U.S. Department of Energy (DOE)’s Visiting Faculty Program (VFP) . The VFP is a summer professional development … for the summer term (May through August) and selected projects will receive stipend and travel expenses, both for …
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Virus-Microbe Interactions of Mud Island Mangroves
… user facilities. Baker had worked with the JGI through a Community Science Program (CSP) proposal, and Rambo’s research builds on that. “The … his time with the JGI has shaped his post-graduate school plans. “The SCGSR gave me some great insight into my career …
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Webinar: SIP technologies at EMSL and JGI
… separation to library sequencing and assembly. Like others, our turnaround time has been impacted by the pandemic. 3. Q: … We estimate the overall atom enrichment within the bulk community DNA, and that gives us a rough estimate of whether … collection. 4. Q: Are there existing narratives, or plans to develop narratives in KBase for SIP studies? I’d be …
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Dan Rokhsar
… joined the JGI in 2000 as the founding Associate Director for Computational Genomics, and led the computational efforts directed towards the sequencing, annotation, and analysis of three human … Genomics group, and is past lead of the Eukaryotic Genome Program (2010-2019), and JGI Chief Informatics Officer …
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Igor Grigoriev
… industry. He holds joint appointments as Fungal and Algal Program Head at the JGI, a Senior Scientist at Lawrence … of Plant and Microbial Biology at University of California, Berkeley. He contributed to the Human Genome Project … Dr. Grigoriev engaged thousands of researchers in genome projects and organized numerous genomics workshops. …
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Metabolomics Technology Group
… Our lab is using mass spectrometry based metabolite … profiling to provide direct biochemical datasets to improve our understanding of microbial metabolism. Of particular … networks of environmental microbes and how they transform their environment. Research Team    …
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From Competition to Cooperation
… to carry out a broader analysis than had ever been done before to look at how multiple forest fungi have independently evolved to establish … Summary There are three types of fungal saprotrophs in the forest. White rot can break down the cellulose, … Ecosystems project (CSP # 570) and the 1000 Fungal Genome projects (CSP # 662 & 1974). This research was also …
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JGI Advisory Committee
… on the Institute’s strategic, scientific, technical, informatics, management, and operational objectives. Serving … Science User Advisory Committee, the Fungal and Algal Program User Advisory Committee, the Informatics Advisory Committee, the Plant Program User Advisory Committee, the Prokaryote Program User …
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