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Microbiome Data Science Team
Biology is currently experiencing a revolution brought on by rapid developments in genomics and other … and visualization of “big data,” and artificial Intelligent/machine learning approaches in data analysis and … discoveries and catalyzing a major transition of biology into data science.  Research in the Kyrpides group focuses on …
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FICUS Overview
The Facilities Integrating Collaborations for User Science (FICUS) initiative was established in 2014 to encourage and enable researchers to more easily integrate … be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds. …
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SPRUCE-ing Up Science
A former JGI intern is now applying his internship lessons on presentations to peatlands Travis Lawrence sits in his backyard in … with program co-founder and JGI mentor, Zhong Wang. Together, they worked to develop a tool that leveraged machine …
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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An Integrated Dataset to Understand Ecosystem Interaction
… tree and soil dataset for understanding the dynamic relationship between poplar trees and their microbial partners. The Science To help better understand how ecosystems work and how … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo once … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … who were already working on mining prokaryotic viruses together, learned from JGI’s Nikos Kyrpides that his …
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Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.
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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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FICUS-NERSC/KBASE
The mission of the Joint Genome Institute is to serve the scientific … expand upon highly successful past collaborations, the DOE JGI, NERSC and KBase issued a call for proposals in …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
New 5-year strategic plan outlines how the JGI will advance the bioeconomy, leveraging partnerships to advance foundational science, creating opportunities for … to focus on stewardship for the taxpayer money that we are getting, managing our people and resources responsibly,” …
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Frederik Schulz
Dr. Schulz employs multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning to find novel functions that may impact … and biogeochemical cycles. He provides his expertise to the JGI user community and supports various user projects in the …
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2025 NeLLi Symposium
Research Institute, the 2025 NeLLi Symposium delves into the most recent expansions of the Tree of Life and latest … in cultivation and environmental genomics will work together to develop recommendations for cultivating new … 48″ wide or less to ensure 2 posters fitting on the boards. JGI posters are typically printed in the ARCH E size which …
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