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Identification of a Novel Nematotoxic Protein by Challenging the Model Mushroom Coprinopsis cinerea with a Fungivorous Nematode
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Model Communities Hint at Promiscuous Metabolic Linkages between Ubiquitous Free-Living Freshwater Bacteria
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Extensions of BLUP Models for Genomic Prediction in Heterogeneous Populations: Application in a Diverse Switchgrass Sample
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Experimental Identification of Small Non-Coding RNAs in the Model Marine Bacterium Ruegeria pomeroyi DSS-3
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JGI Portals
Our data platforms are a key resource for the broader scientific … their associated metadata, around the world. … The IMG/M system serves as a community resource for comparative … of reference isolate genomes included from the IMG/M system. … IMG/PR is a plasmid genome resource featuring the …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… which could then be converted into sustainable biofuels . For its importance to the DOE mission, switchgrass is among … the genomes of two varieties of a close relative and model species. The following year saw the beginnings of … products. JGI-enabled research is also informing how these grasses have adapted to a range of climates and …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… and scientists of secondary metabolism. Welcome back for our second season of Natural Prodcast. This first … but also those molecules that mediate a well functioning ecosystem and environment and earth. So yeah, it’s like these … of genes that it searches for and uses a rule-based system that classifies the things that it finds into which …
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The Sorghum bicolor genome and the diversification of grasses
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Natural Prodcast Episode 21: Elizabeth Parkinson
… not good at that, you guys. I’m trying really hard just for you. And the JGI Comms team. But mostly you. Anyway…I’m … can turn on the natural product, say clusters or expression systems so that-- BETSY PARKINSON: Exactly. DAN: --you get … Mainly actinos. Yeah. DAN: Yeah. I mean, those are the systems that are best understood right now. So yeah. If you …
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Natural Prodcast Episode 2: The Primer, Part 2
… so secondary metabolism is throughout nature, except maybe for animals and humans, not as much. You know, we have this … ALISON: It sounds like it’s kind of like our endocrine system or hormones in a way too. Like in a maybe analogous … not recognize that this weird, fatty acid synthase kind of system, like, maybe this bacteria just makes fatty acids in …
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Gene Context Analysis in the Integrated Microbial Genomes (IMG) Data Management System
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Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system
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