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A bloom of a single bacterium shapes the microbiome during outdoor diatom cultivation collapse
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Conserved environmental adaptations of stream microbiomes in the hyporheic zone across North America
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Animal-associated jumbo phages as widespread and active modulators of gut microbiome ecology and metabolism
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Jeremy Schmutz
… working for the Stanford Human Genome Center, now the HudsonAlpha Institute for Biotechnology. There he constructed the pipelines for directed finishing and co-led … 13 years, Mr. Schmutz has directed the JGI Plant Program, focusing on the organization of community driven science for …
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Nikos Kyrpides
… at the University of Illinois at Urbana-Champaign and at Argonne National Laboratory. Dr. Kyrpides’ research focus on Microbiome Research with an emphasis on Microbiome Data … BA in Biology, Aristotle University of Thessaloniki, Greece PhD in Molecular Biology and Biotechnology, …
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You Can Move, But You Can’t Hide
… and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. They can be found … called geNomad identifies and classifies MGEs based upon their gene content and their genetic sequences. The … software was created by researchers under the direction of Microbiome Data Science Group Lead Nikos Kyrpides at the …
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Soil virus offers insight into maintaining microorganisms
… researchers have identified a virus protein tied to carbon cycling.  The Science Through a collaborative effort, … of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). Using 5,000 images of … retrieved using the  JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) data portal. The IMG suite is a …
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JGI Portals
… new algorithms, models and tools in support of DOE mission priorities. Data discoverability and accessibility are … for further science.  NOTICE The Data Portal application has replaced the JGI Genome Portal . Book a session via the appointment calendar for technical help, feedback …
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Meanders as a scaling motif for understanding of floodplain soil microbiome and biogeochemical potential at the watershed scale
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Functional and genetic markers of niche partitioning among enigmatic members of the human oral microbiome
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Heterospecific Neighbor Plants Impact Root Microbiome Diversity and Molecular Function of Root Fungi
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The rhizosphere microbiome of burned holm-oak: potential role of the genus Arthrobacter in the recovery of burned soils
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