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Plant Pan-Genomics Comes of Age
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JGI announces 2024 Functional Genomics awardees
…   Each year, the JGI accepts proposals for state-of-the-art … applications in support of advancing the bioeconomy.  This year’s project goals range from improving crop productivity … nine researchers accepted for 2024. Proposals are accepted year-round; the next deadline is Jan. 30, 2025. …
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Hiroshi Otani
… the natural product galaxy. J Ind Microbiol Biotechnol. 2019 Mar;46(3-4):273-279.   Otani, H., Stogios, P.J, Xu, X., … Otani, H., Lee, Y.E., Casabon, I., and Eltis, L.D. (2014) Characterization of p-hydroxycinnamate catabolism in a …
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Effects of Polar Light Cycle on Microbial Food Web
… bacteria (phototrophs) in Antarctica’s Ace Lake defy the norm when it comes to nutrient cycling in polar … was separated from the Southern Ocean roughly 5-7,000 years ago and has been well-studied by many researchers for … Water samples from Ace Lake were collected over a 10-year period and sent to JGI for metagenomic sequencing. A …
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Graduate Students Get Thesis Research Opportunity at the JGI
Twice a year, the DOE Office of Science Graduate Student Research … the next generation workforce.  Since its inception in 2014, more than 20 UC Merced students have contributed to the …
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Simon Roux
… the development of novel computational tools to identify virus sequences, the design of new experimental … For this role, Dr. Roux can rely on more than 10 years of expertise in the fields of virus ecology and virus … genomes. Nature biotechnology 39, 578-585. Roux et al., 2019. Cryptic inoviruses revealed as pervasive in bacteria …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… papers during the last decade” by Clarivate Analytics. This year’s list features 6,849 individual researchers from 67 … rank in the top 1% by citations for field and publication year are: Igor Grigoriev (Cross-field) Natalia Ivanova … in its resiliency, as well as a Nature Plants study identifying colonization patterns in eelgrass . Igor Grigoriev’s …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… the microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome Institute, a DOE … to easily analyze viral genomes. This includes (i) classifying viruses into groups that can be compared across … for one field of research can be harnessed elsewhere. In a  2019 paper , the team applied computational methods and …
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Clades of huge phages from across Earth’s ecosystems
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
Every year, the JGI sequences around 35,000 samples — from plants, …
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JGI on the 2021 Highly Cited Researchers List
… rank in the top 1% by citations for field and publication year are: Igor Grigoriev Natalia Ivanova Nikos Kyrpides Dan … researchers were involved in, reported on over the last year: Jeremy Schmutz was part of a long-term … Woyke were among JGI staff who mentored students this past year, through programs including the JGI-UC Merced Genomics …
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JGI announces 2023 CSP Functional Genomics awardees
…   Each year, the JGI accepts proposals for state-of-the-art … six researchers accepted for 2023. Proposals are accepted year-round; the next deadline is Jan. 29, 2024.  …
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