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JGI Accepts 17 Proposals for Community Science Program
… portfolio of approved proposals highlight biodiversity and how ecosystems are adapting to stresses. A total of 17 … glacially dominated Copper River Delta. They’re looking at how the microbes in these high latitude wetlands, such as … of Massachusetts Amherst and colleagues are studying how chronic warming is altering how microbes interact with …
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Genome and proteome analyses show the gaseous alkane degrader Desulfosarcina sp. strain BuS5 as an extreme metabolic specialist
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Complete genome sequence of Nitrosomonas sp. Is79, an ammonia oxidizing bacterium adapted to low ammonium concentrations
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Nitrogen fixation in Pampinifervens, a new species-rich genus of Aquificaceae that inhabits a wide pH range in terrestrial hot springs
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Low Mutation Rate and Atypical Mutation Spectrum in Prasinoderma coloniale: Insights From an Early Diverging Green Lineage
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Phylogenetically distinct fungal expansins show different binding preferences towards cellulosic materials and enhance cellulase activity
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… DNA outside a cell is key to interrogating what genes do, how they work, and applying them to environmental and energy … a series of case studies, JGI scientific users share how they’ve worked with the JGI DNA Synthesis Science … bioenergy crops: current progress and challenges , details how an interdisciplinary collaboration between three …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA sequences … Q&A from the Webinar: Input & sequencing Q(uestion): How much DNA is needed for “regular” vs the ultra-low input … is an important factor as well for PacBio metagenomes. Q: How many PacBio metagenomes can I submit?  How deeply are …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… mode’, where they do very little.  SIP experiments can show which species actively munch on a specific chemical … this to untangle which microbes ate the compound and how much they ate.  These analyses provide granular insight … of an environment. For example, SIP experiments can show how soil microbes cycle nitrogen and carbon, or how …
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Exploring Possibilities: 2022 JGI-UC Merced Interns
… video, UC Merced undergraduate and graduate students share how their summer internship experiences have influenced … Vasquez : So this summer what I learned at the JGI is how to really work in the government lab. And I find this … internship is gonna help me in the future because it just showed me when people have a goal and passion for it, it’s …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… without a defined nucleus). Colder waters nearer the poles, however, tend to favor eukaryotes ( microorganisms with a … — with a desire to understand the nuance and gradation of how eukaryotic phytoplankton communities change with … observation of cold and warm microbial networks, and just how clear and stark the biogeographic boundary is between …
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Extracting the Secrets of Secondary Metabolites
… that quickly kill the host. Understanding exactly how P. luminescens and its secondary metabolites work could … researchers to delete or activate certain genes and assess how these edits affect functionality.  CRAGE allows for the … loss- and gain-of-function. The study’s analytical data shows peaks and valleys in secondary metabolites as genes are …
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