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Identifying the Microbial Cleanup Crew at a Superfund Site
… break down PCE into the chemical compound ethene. Applying genome sequencing and analysis, the researchers identified … , they were able to analyze the resulting metagenomic data. (Data from the project are available on the  JGI Genome Portal .) The team has also been able to discover additional …
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ActinoBase: tools and protocols for researchers working on Streptomyces and other filamentous actinobacteria
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IMG/VR v.2.0: an integrated data management and analysis system for cultivated and environmental viral genomes
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IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes
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A Community Resource for Secondary Metabolite Researchers
… gene clusters (BGCs.) As reported in the recent Database issue of the journal Nucleic Acids Research , … over 1.3 million publicly available bacterial and archaeal genome and contig sources.  The Impact Secondary metabolites … using multiple commonly used sequence analysis tools is a means of expediting BGC and biosynthesis …
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Data shopping in an open marketplace: Introducing the Ontogrator web application for marking up data using ontologies and browsing using facets
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … of their well-designed sampling and analysis of their data at the time. Following the publication of their paper … genome and transcriptome data were generated, bioinformatic tools for binning metagenome data involved with mainly …
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A data analysis and coordination center for the human microbiome project
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BioPig: a Hadoop-based analytic toolkit for large-scale sequence data
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Protein structure determination using metagenome sequence data
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Microbiome Data Science: Understanding Our Microbial Planet
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BAYESIAN SPATIAL-TEMPORAL MODELING OF ECOLOGICAL ZERO-INFLATED COUNT DATA.
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