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Phylogenetic and Functional Analysis of Metagenome Sequence from High-Temperature Archaeal Habitats Demonstrate Linkages between Metabolic Potential and Geochemistry
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… culture. Beginning in the early 2000s , these environmental metagenomes began to offer a window into viral existence. … identifying viruses across many thousands of genomes and metagenomes, called geNomad (watch Antonio Camargo present …
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Impacts of Maize Domestication and Breeding on Rhizosphere Microbial Community Recruitment from a Nutrient Depleted Agricultural Soil
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… – DNA sequencing, synthesis, metabolomics, data analysis, and new technology developments – has advanced … address of the 2023 JGI Annual Meeting. As the JGI’s Metagenome Science Program Head, Emiley Eloe-Fadrosh, … has been at the forefront of Covid-19 research (see his  2021 VEGA talk ). A global authority on viruses, Holmes was …
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Virus-Microbe Interactions of Mud Island Mangroves
… worked with the JGI through a Community Science Program (CSP) proposal, and Rambo’s research builds on that. “The purpose of this CSP is to better understand methane cycling in mangrove wetlands in south Texas,” he explained. …
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Digging into Microbial Ecosystems Deep Underground
… underpin so much of what we see on earth in terms of nutrient cycles and biogeochemical cycles…. Viruses play a pretty important role in the cycling of nutrients in these systems.” -Mike Wilkins, Colorado State …
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Matthew Kellom
… are of particular interest. Matt also supports various CSP and FICUS user projects for the Metagenome Program. …
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Accelerating Metagenomics Discoveries with Deep Learning
… integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
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Applying Viral Genomics Expertise to Understanding the Human Virome
… CheckV , which assesses the quality and completeness of metagenome-assembled viral genomes ( Nature Biotechnology , 2021), geNomad , a tool for identifying mobile genetic … University. The CODCC aims to coordinate data acquisition, analysis, and visualization through a sustainable, …
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Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software
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A remarkable expansion of oligopeptide transporter genes in rust fungi (Pucciniales) suggests a specialization in nutrients acquisition for obligate biotrophy.
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