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Plant Program
… collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to address global … to environmental changes. The program lays the groundwork for sustainable solutions to current problems facing … species and plant-microbe interactions, advancing efforts to create renewable energy sources and bolster …
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2024 Progress Report
… The Integrative Genomics Building (IGB) seen above is home to … the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the IGB. Vision  Lead genomic innovation for a sustainable bioeconomy. Mission  As a U.S. Department …
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How To Use Our Systems
… One of the JGI’s key assets is our user community, comprising a broad range of researchers and trainees who use JGI … Our community of data-downloading users spans tens of thousands of researchers. The JGI is always seeking to better … Each portal lists a contact, or you can reach out via the form on our website.   …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… Meta-omics datasets show that CRISPR-Cas systems determine mutualism or parasitism between some archaeal hosts and … how these hosts and hitchhikers coexist is key for understanding their impact on wider ecosystems, but … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), as well as …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… is characteristic of the sex chromosomes of mammals is, for the first time, seen in a plant. The Science Sex in plants can be befuddling. … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory. The JGI sequenced the shrub … 2016YFD0600101), and the National Key Project for Basic Research (2012CB114504). The work conducted by the …
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Webinar: MycoCosm Tutorial
… Learn more about JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics … 1.  Q(uestion): Do you accept oomycetes to be proposed for genome sequencing, or only “true fungi”? A(nswer): Our … and TCDB ( http://tcdb.org/ ) databases, respectively. For secondary metabolism clusters, we have developed in-house …
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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics … he served as a Research Molecular Biologist at the USDA for 12 years where he was a driving force behind the development of numerous genomic resources … self compatibility, rapid generation time and simple growth requirements. Links to experimental resources and background …
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Len Pennacchio
… In 2003, Dr. Pennacchio joined the DOE Joint Genome … DOE Joint Genome Institute, Senior Scientist at Lawrence Berkeley Laboratory, and Adjunct Professor at UC Berkeley. … his Ph.D in 1998 from the Department of Genetics at Stanford University where he uncovered the genetic cause of a …
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Webinar: SIP technologies at EMSL and JGI
… Molecular Sciences Laboratory (EMSL) and the Joint Genome Institute (JGI) provide access to a variety of … from the Webinar: 1. Q(uestion): How much DNA is required for the JGI SIP metagenomics pipeline? A(nswer):  The more … lipids, metabolites, it gets to the point where sometimes more label can be detrimental if you got up to too …
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A Sorghum Pangenome Opens More Doors to Discovery
… Leveraging decades of technological development, dozens of … and thousands of resequenced sorghum varieties, a resource for breeders and researchers to harness the traits that let … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab).  A resource for …
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Help from Citrus’ Bitter, Hardier Cousin
… clues to disease-resistance that could prove fruitful for saving Citrus from greening disease. You’ve probably never … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), played a … a DOE Office of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing …
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Accelerating Metagenomics Discoveries with Deep Learning
… On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) and other institutions shared their works-in-progress with 86 … participants in an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing …
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