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Comparison between Ribosomal Assembly and Machine Learning Tools for Microbial Identification of Organisms with Different Characteristics
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Architecture, catalysis and regulation of methylthio-alkane reductase for bacterial sulfur acquisition from volatile organic compounds
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Metagenome Program
… The Metagenome Program uses advanced sequencing technologies to decode the genomes … and micro-eukaryoes, along with their associated viruses and mobile genetic elements. Beyond exploring and … microbial diversity, work in the Metagenome Program uses several experimental approaches to assess microbial …
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Viral Genomics Group
… however they do so under strong constraints exerted by viruses. Research in the viral genomics group aims at improving … of ecological and evolutionary parameters driving virus:host dynamics in environmental microbial communities. … characterization of molecular mechanisms involved in virus:host interaction and host cell take-over by viruses, and …
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A More Intuitive Phytozome Interface
… interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, and  … v13. Below are some answers to Frequently Asked Questions about the transition from Phytozome v12 to v13. Why is it … The ability to user query sequences to gene families What about PhytoMine? PhytoMine, the Phytozome implementation of …
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Plant Program
… With collaborative user projects, the JGI’s Plant Program delves into the … environmental changes. The program lays the groundwork for sustainable solutions to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe … of plants’ biological and ecological roles to foster sustainable solutions for energy, agriculture and the …
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Steven Wilson
… submission and review, project and work order creation and management, automated sequence quality control and … and our institutional website.   Mr. Wilson brings a user-centered approach, an ability to work with others to … with the Informatics Department to develop software that pushed instrument run information directly into the database …
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Fine-scale evaluation of two standard 16S rRNA gene amplicon primer pairs for analysis of total prokaryotes and archaeal nitrifiers in differently managed soils
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An Earth Month Look at Sustainability Efforts at the JGI
… Sustainable Berkeley Lab maintains a  calendar of Earth Month … models. They also implemented the use of Klaatu, a freezer management system that monitors energy use and helps detect … Members from across Berkeley Lab gathered to learn more about planting and tending these shoots of their own. The …
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Genomic Expansion of Domain Archaea Highlights Roles for Organisms from New Phyla in Anaerobic Carbon Cycling
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Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea
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The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization
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