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Marcel Huntemann
Marcel is in charge of several production pipelines (gene calling, … annotation and methylomics) that run on microbial genomes and metagenomes. He also works on automating intra-department data …
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JGI Workshops at PAG
Jan. 12 workshop: The Rapidly Expanding Genomics of Algae   With advances in genomics … breadth of algal diversity, the numbers of sequenced algal genomes, and the quality of those genomes, is rising. The purpose of this Workshop is to …
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Uri Neri
Neri is a computational biologist who spends his days wrangling viral genomes and occasionally remembering to document his code. At JGI, he develops tools for …
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MycoCosm Tutorial
… more about MycoCosm, a data portal with over 2,000 fungal genomes and multi-omics datasets, equipped with interactive web-based tools for comparative genomics and …
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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
Camargo and Simon Roux, a few of the JGI researchers behind software that finds plasmids and viruses within microbial genomes. As mobile genetic elements like viruses spread …
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Filling in the Plant Tree of Life
… we understood plants and how they adapt to their ever-changing environments better? We could unlock new innovations to drive more productive food, medicine, and bioenergy crops. But most available genomes are from narrow swaths of the plant tree of life. …
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IMG/VR
… the latest release of IMG database dedicated to viral genomes assembled from metagenomes. He also demonstrates briefly how to leverage novel … through the more than 2 million viral sequences available in IMG/VR v3. …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
Researchers from the JGI recognized for their “significant influence in their chosen field or fields through the … were all instrumental in the development of the Novel Metagenome Protein Families (NMPF) Catalog . Published in the … He was also senior author on a study which identified new genomes highlighting the diversity of white rot fungi in the …
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DOE JGI Interns Share Their Summer Experiences
This summer, the DOE JGI hosted 10 interns who came from a wide range of backgrounds. Many of them spent the summer crunching genomic data at a computer; a few had the opportunity to … summer were: Rida Ali, who worked with T.B.K. Reddy on the Genomes OnLine Database; Sarah Fruchart , who worked with …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
The JGI Engagement Webinar held November 5, 2020 (watch the  video below, captions … and untargeted approaches. The webinar featured  Trent Northen and Ben Bowen of the  JGI Metabolomics Program , … (uM etc).  … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
Laboratory (EMSL) co-hosted a JGI Engagement: Accessing Resources at Multiple DOE User Facilities with a Single Proposal webinar, inviting researchers to apply for … to their resources. … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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JGI Earth Month: Kjiersten Fagnan Reflects on Shelter-in-Place Effects
In   April 2020, we mark both the 50th celebration of Earth … 22, and DNA Day on April 25.  On March 17, 2020, a shelter-in-place order for all residents took effect in six San … order.     … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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