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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
Science . It detailed how they’d used metagenomics to identify over 27,000 microbial genes. The data from that study …
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JGIota: Looking Back at Methane-Making Microbes
… bacteria and archaea breaking down plant matter. So since 2010, the JGI has supported researchers studying those …
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Fungal Friends or Foes in Plant Roots
… plant host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots … from other plant-associated fungi. Their analysis identified fungal gene families that help determine if these … toward filling gaps on the fungal Tree of Life through the 1000 Fungal Genomes Project. Hacquard’s group had assembled …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
I’m Alison Takemura at the US Department of Energy Joint Genome Institute, or JGI.  Two special days occur in April: … I recently caught up with Karolina at the Plant and Animal Genomes, or PAG conference, when in-person meetings were … climate change intensifies and accelerates drought and desertification across the globe.  Karolina and I kicked off our …
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A Natural Mechanism Can Turbocharge Viral Evolution
… ago, a team discovered a group of viruses that had in their genomes a surprising tool: a “diversity generating … used resources of the National Energy Research Scientific Computing Center (NERSC), a U.S. Department of Energy … R.C. was supported by the Australian Research Council (DP150100244) and the Australian Antarctic Science program …
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Daniel Udwary
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… rapid environmental changes. Researchers were able to identify specific genes that allow the algae to adapt to sudden … sequencing from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Alliance of Canada-Compute Canada facilities. The work (10.46936/10.25585/60001017) conducted by the U.S. Department …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… structures that enable organisms to swim around. However, genome and metagenomic sequencing conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … biofuel production. … The work (proposal:  https://doi.org/10.46936/10.25585/60000691 , and  …
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Triggering Morel Fruiting
Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … from an external source.  The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic … continued to seek other ways to make morels fruit under artificial environments, a technique to supply exogenous …
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Doubling Down on Known Protein Families
… a dark room with a flashlight, only able to clearly identify what falls within that single beam. When it comes to … of scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … families. From there they focused on families with at least 100 members.  “If you have 100 sequences, the quality of the …
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JGI Accepts 17 Proposals for Community Science Program
… (CSP) call of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Berkeley aims to redesign and engineer algae by identifying the algal regulators that could boost lipid … international collaboration that produced the reference genome sequence for Eucalyptus grandis. Accessing recently …
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You Can Move, But You Can’t Hide
… at the JGI develop a tool to quickly and accurately identify mobile genetic elements like plasmids and viruses. The … Lead Nikos Kyrpides at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … Resource (IMG/VR) , now with more than 15 million viral genomes. It was also key to developing the first version of …
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