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IMA genome-F18
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Marianne Buscaglia
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was … Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the development of the virus …
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Rex Malmstrom
… genomics pipeline that provides JGI users access to the genomes of uncultured microbes.  His group also handles the … PNAS 113 (28), E4069-E4078 Bendall, M.L. et al. 2016. Genome-wide selective sweeps and gene-specific sweeps in …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… 15 years, Ray Turner has been one constant for the Joint Genome Institute. On July 1, 2020, that all changed. Ray’s … 15 years, Ray Turner has been one constant for the Joint Genome Institute. On July 1, 2020, that all changed. Ray’s … at a high level as JGI transitioned from the Human Genome Project to gaining momentum as a national user …
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JGI Hosts GPU Hackathon in May
… (OLCF), NVIDIA, and the Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user …
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iPHoP: A Matchmaker for Phages and their Hosts
… integrated prediction a confidence score. The result is a genus-level host prediction tool that draws on the strengths … led by scientists at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … The work conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… cattails. In 2018, the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … email inquiries, sent through JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) system, reached  Emiley Eloe-Fadrosh , who heads the  Metagenome Program . “After discussing the project with him, I …
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What Happens Underground Influences Global Nutrient Cycles
Molecular Sciences Laboratory (EMSL) and the  DOE Joint Genome Institute (JGI)—have selected 11 proposals for … alga  Chlamydomonas reinhardtii , one of the JGI’s Flagship genomes. She and her colleagues have generated a … their FICUS proposal include assessing the distribution of genome-derived functional traits through the soil profile …
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SPRUCE-ing Up Science
… one of the first students to participate in the DOE Joint Genome Institute (JGI)-UC Merced internship program, … with renowned scientists who were involved in the Human Genome Project, or computational biologists who were …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
UEA and including the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … (The Netherlands). … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Simon Roux
… in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development … learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria. PLoS Biology … al., 2018. Minimum Information about an Uncultivated Virus Genome (MIUViG). Nature Biotechnology 37, 29–37. Berg et …
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