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Whole genome sequence, CAZyme repertoire and sugar metabolic model of the phytopathogenic fungus Kretzschmaria zonata GFP 132
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A Chromosome-Scale Genome Assembly of the Flax Rust Fungus Reveals the Two Unusually Large Effector Proteins, AvrM3 and AvrN.
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Triggering Morel Fruiting
… Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … as plant litter and to incorporate the assimilated carbon into the soil, reducing the amount of CO2 emissions from decaying leaves and woods into the atmosphere, while increasing the organic matter and …
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Fishing for Novel Cellulose Degraders
… by Tanja Woyke at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … “hook” of fluorescence-activated cell sorting to sort cells into several small pools, followed by whole genome amplification and shotgun sequencing. The team first …
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JGI Workshop at SIMB NP Meeting
… a given BGC in various hosts, availability of sequenced genomes, and computing resources needed to predict BGCs from available genome sequences. The DOE Joint Genome Institute (JGI), a DOE Office of Science User …
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Learning to Look
… Machine learning approach significantly expands inovirus diversity. To answer the question, “Where’s … by scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … phages!” said Krupovic. “We can now start inquiring into their impact on microbial communities in the …
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Extracting the Secrets of Secondary Metabolites
… Repeats) is the leading tool for accurately editing genomes, its effectiveness has historically been limited due … to the lack of robust tools available for carrying CRISPR into microorganisms. CRAGE (Chassis-independent … can use to integrate large genetic payloads directly into diverse microbes. Combining CRAGE with CRISPR provides …
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DOE Metrics
… related to the return-to-work plan in response to the pandemic.   FY 2019 Number of Unique Users There were 1,933 … developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – Report on progress … the interpretation of microbial, metagenomic, or plant genomes. [Download PDF] End-of-year Goal – Develop one new …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… of Energy national user facilities – the DOE Joint Genome Institute and the Molecular Foundry – both located at … work conducted by the U.S. Department of Energy (DOE) Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE Office … Genome-Encoded Bio(Nano)Materials …
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Eelgrass Proves to Be Much Younger Than We Thought
… of the most abundant plants in the ocean, originated in Japan before spreading around the globe. Now, scientists have … ago, when eelgrass traveled across the ocean current from Japan to colonize the southern California and Mexican … form of another species, so the scientists had to use the genome itself.   Approximately 67 million years ago, the …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… I’m Alison Takemura at the US Department of Energy Joint Genome Institute, or JGI.  Two special days occur in April: … called stomata. And through those pores, water is moved into the atmosphere basically along its concentration … prevent water loss, but that also prevents CO2 from coming into the leaf and it basically starves the plants.  ALISON:  …
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Access to Rock Star Scientists
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