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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… ancestral and present-day plants The Science In a recent  Nature Genetics paper , researchers focused on the full composition of genes, or pangenome, of the model plant  Marchantia polymorpha. Commonly … 35 major evolutionary plant lineages in the  Open Green Genomes Initiative , a project supported by the U.S. …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… described host-virus dynamics in a microbial mat. The Science In microbial mats, communities of … lysogeny, they can insinuate themselves inside the host’s genome, living quietly and replicating with their host … researcher at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… As part of the JGI’s 25th anniversary celebration, the 2022 Annual Meeting featured speakers who shared … from its beginnings in the sequencing for the Human Genome Project out to the future of the institution. Their … very first project — the revolutionary work of the human genome project, which spanned nearly two decades, was filled …
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the … often source their nutrients — the shii tree, a Japanese relative of the oak. These fungi are part of the … around the world. By complete sequencing of 24 new mushroom genomes, and assembling genomes from 60 existing sequences, …
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Nandita Nath
… Nandita is involved in developing new methods to improve genome recovery from single cells and to build sequencing libraries from minimal DNA input without amplification. …
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JGI & KBase at PAG XXVII
… The Plant and Animal Genome XXVII Conference (PAG) takes place January 12-16, 2019, in San Diego, Calif. Representatives from the DOE Joint Genome Institute (JGI) and the  DOE Systems Biology …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… and giant viruses. While the microbes in a single drop of water could outnumber a small city’s population, the number … archaea and eukaryotes, and they range in particle and genome size from small, to large and even giant. The genomes of giant viruses are on the order of 100 times the …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… A nuanced understanding of peat moss drives insight into carbon storage   The Science … change. Researchers at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … HudsonAlpha Institute for Biotechnology sequenced sphagnum  genomes from plants selected by a team from Duke University, …
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Danielle Goudeau
… Danielle operates the single-cell genomics pipeline for JGI collaborators. This work combines custom flow cytometric analysis, cell sorting, genome amplification, PCR screening, and 16S sequencing. She …
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Panel Discussion: Launching & Sustaining Startups in Synthetic Biology
… Biology Who’s Invited? All Berkeley Lab Employees and Affiliates. When: August 29th, 3:00 pm – 5:30 pm 3:00 pm – 4:15 … Hoppy Hour @ Calicraft Brewing, Walnut Creek Where:  Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek … Road company) Hosted by Nigel Mouncey, Director, DOE Joint Genome Institute Read a synthesis from the panel discussion  …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… (CSP) call of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley … evolved into a full-scale proposal known as the Brassicales Genome Initiative. Brassicales is represented by more than …
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A Community Resource for Secondary Metabolite Researchers
… The Secondary Metabolism Collaboratory encourages user engagement. The Science In addition to … over 1.3 million publicly available bacterial and archaeal genome and contig sources.  The Impact Secondary metabolites … or tools. The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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