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Neha Varghese
… analysis and interpretation of genomic and metagenomic data for JGI’s user community. She also provides support for …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… , which can have pronounced ecological and evolutionary consequences. A previous study conducted by our research team … alters genomic diversity, fitness, and adaptability. Using a combination of genomic, quantitative genetic, … by our new switchgrass manuscript , we plan to use existing data as well as generating additional genomic resources to …
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2025 Progress Report
… JGI researchers demonstrate how their laboratory and data science efforts support users, advance foundational … advanced genomic capabilities, large-scale AI-ready data and professional expertise to support the global …
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User Programs
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… from different phyla are capable of methanogenesis. Using metagenomics eliminates confirmation bias, because it …
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JGI@25: Solving the Mystery of the Missing Oil
… tracked the thousands of bacterial and archaeal species using a DNA-based array developed at Berkeley Lab. Over the …
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Introducing New Members of the JGI User Executive Committee
… in giving a voice to JGI users who feel that certain data sharing policies fail to represent the needs of large … unaware that [public but use-restricted] exist on [the JGI data portal] IMG or how to deal with situations in which they inadvertently analyzed use-restricted data without contacting the lab that generated that data,” …
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What Happens Underground Influences Global Nutrient Cycles
… Tfaily of the University of Arizona. Her team aims to use data from an interdisciplinary field campaign taking place … drought and multi-isotope labeling experiment, and the data will allow them to better understand the impacts of …
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JGI Hosts GPU Hackathon in May
… is one of the largest producers of environmental genomics data and has a strong reputation in the community,” said JGI … event. “The tools we use to process and analyze these data are diverse and porting these codes to GPUs present … workload can leverage future HPC systems – our data and compute challenges aren’t getting any smaller and …
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Charting Progress toward Professional Goals
… invaluable scientific and technical experiences.  Genomic data scientist Deanna Beatty sat down with interns hosted at … hi everyone. My name is Deanna Beatty, and I'm a genomic data scientist here at the JGI, and really happy to be here … Jacobs. I'm a rising sophomore at UC Berkeley studying data science. I’m here at the Lab with the SEED scholars at …
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MycoCosm Tutorial
… Learn more about MycoCosm, a data portal with over 2,000 fungal genomes and multi-omics datasets, equipped with interactive web-based tools for …
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Gene Expression: From On-Off Switch to Dial
… of essential genes in metabolic networks that were missed using traditional approaches. This novel form of …
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