Results

Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil
Learn more
Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1T), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov.,
Learn more
An Automated Tool for Assessing Virus Data Quality
… recovered and identified from environmental samples (metagenomes). However, the quality and completeness of … quality of metagenome-assembled viral genomes, including estimation of genome completeness and removal of contamination … suite, as well as sequences from the Global Ocean Virome 2.0 dataset based on open ocean samples. CheckV identified a …
Learn more
Ben Bowen
… 2024 Berkeley Lab Recognition of Excellence Award 2016 R&D 100 Winner 2014 Berkeley Lab Director’s Award for Exceptional … T., Rübel, O., Keasling, J., Northen, T., & Bowen, B. (2017). OpenMSI Arrayed Analysis Toolkit: analyzing spatially defined samples using mass spectrometry imaging. Analytical chemistry, 89(11), 5818–5823. Baran, R., …
Learn more
JGI Workshops at 33rd Fungal Genetics Conference
… Workshop Steven Ahrendt presenting  Friday, March 20: JGI-EMSL Workshop: "Toward 10,000 Fungal Genomes and Phenotypes" …
Learn more
Neha Varghese
Learn more
Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… has closed at the U.S. Department of Energy (DOE) Joint Genome Institute, a DOE Office of Science User Facility. This year, the 12th JGI-UC Merced cohort consisted of three undergraduate … Asaf Salamov, Igor Grigoriev Project:  Training new JGI genomes with Tiberius Brandon Imstepf Mentor: Brian Bushnell …
Learn more
FICUS Webinar: “Shining a Light: Advanced Photon Source Capabilities for FICUS Research”
… On February 8, 2024, the DOE Joint Genome Institute and the Environmental … (APS) at Argonne National Laboratory when applying to the FY2024 EMSL-JGI FICUS collaborative proposal call . Letters of … for a given experiment such as crystallography, full field imaging, the microscopy, and the use of laboratory …
Learn more
Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
Learn more
Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended
Learn more
The Case for Conservation
… moss Ceratodon purpureus is a short plant with a complex genome . Now, high-quality reference genome sequences of the male and female plants, each … a single set of chromosomes, are available. The genome assemblies highlight the multiple advances in … The work conducted by the U.S. Department of Energy Joint Genome Institute was supported by the Office of Science of …
Learn more
First Monoploid Reference Sequence of Sugarcane
… Sorghum genome serves as a reference for the highly complex … a sugarcane genome is incredibly complex given its estimated size of 10 billion bases (more than three times the … as a reference. The final sugarcane sequence generated is 382 Mb; 25,316 protein-coding gene models were predicted with …
Learn more