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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… all the work that went into this program was the feedback from the graduate student interns; “it changed what I want … interns. For him, it was a special moment to see interns go from being “intimidated and nervous” at the beginning of the … values which are integral to what I do on a daily basis. Two of the most relevant are service and respect, and I live …
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An Addiction Crucial to a Fungus’ Reproduction
… as a mutualist, where both species of organism benefit from association, but was predicted to have evolved from a parasitic interaction with their soil fungus host, … with the fungi and bacteria, while the DOE JGI team sequenced and annotated a host genome (Rm ATCC 52813) as …
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FICUS Webinar: “Shining a Light: Advanced Photon Source Capabilities for FICUS Research”
… the power of genomics and molecular characterization from the JGI and EMSL in one proposed research project. In … National Laboratory, the National Ecological Observatory Network (NEON) , and now the APS as well. Presentations from: Mary Lipton , EMSL: Introduction to the Facilities …
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Thawing permafrost, microbes, and viruses: Gary Trubl — Part 2
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal genomes to classify gene families. The … through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact The class  Dothideomycetes includes fungi that obtain nutrients from decaying organic matter (saprobes), and many plant …
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A Complex Confection Decoded: Sugarcane Reference Genome
… to future environmental conditions. Additionally, insights from the genome could help scale sustainable sugarcane … and took more than a decade because there were pieces from multiple boxes, including some duplicates, to sort … Community Science Program; in 2018, a monoploid reference sequence of sugarcane was published as a step forward in …
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JGI Advisory Committees Code of Conduct
… the trust of our stakeholders. These stakeholders range from scientists to members of the public whose tax dollars …
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Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type strain (SPN1T), reclassification in the genus Sphaerochaeta as Sphaerochaeta coccoides comb. nov. and emendations of the family Spirochaetaceae and the genus
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Triggering Morel Fruiting
… A collaborative team led by Hao Tan from the Sichuan Academy of Agricultural Sciences in China … M. importuna CCBAS932 from the forests of France, were sequenced and annotated by a collaborative team. The genome sequences and annotations are available on JGI’s fungal …
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Four Researchers Join JGI User Executive Committee
… Microbial Program over the past decade in gene regulatory network projects supported by the CSP, and as part of … Kristen DeAngelis will serve as the Past Chair.  Aside from the duties described above, the UEC also contributes to … has been an active user of the JGI at any time in the past two fiscal years is eligible for election to the UEC. …
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JGI Hosts GPU Hackathon in May
… and the code owners will be able to get assistance from mentors and a team to port their code to a new … From our partners …
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