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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … 2021 Laboratory Directed Research and Development (LDRD) program. Cole also received a DOE  Early Career Research … this spatial transcriptomics data captured molecular information from both plant cells and fungal cells. “Because …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… JGI, ESnet are U.S. Department of Energy Office of Science user facilities. The HPCwire Editors Choice Award for Best … assembly of environmental microbiomes.” JGI’s Chief Informatics Officer  Kjiersten Fagnan touted the … excited to be able to offer this capability to the JGI user community moving forward and to assemble, for the first time …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… UniProt, exist, are not specific enough for a microbial community like that from a temperate coniferous forest floor … out these distractions. Combining genome and transcriptome information allowed the team to have a much more … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Identifying Aspects of the Post-Transcriptional Program Governing the Proteome of the Green Alga Micromonas pusilla
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … yet,” said Igor Grigoriev, Fungal Genomics Program Head at the JGI.  Along with an improved … These tools give researchers a way to access much more information about fungi in these environments. “Now with …
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A Natural Mechanism Can Turbocharge Viral Evolution
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility located at Lawrence Berkeley National … support the idea. Study coauthor Stephen Nayfach, a JGI bioinformatics research scientist, found that pieces of viruses … a fishing line, without harming the rest of the microbial community. The study’s publicly available dataset gives …
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UC Merced Interns Reflect on Their JGI Summer Projects
… language processing techniques to categorize genetic information. Learn more about their work here in a series of … at the end of the summer. The JGI-UC Merced internship program was founded in 2014 with the goal of inspiring … genomics, and to help foster a diverse future workforce in science. Since the program’s inception, more than 30 …
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JGI announces 2023 CSP Functional Genomics awardees
… functional genomics research from potential users who need help translating genomic information into biological function. Through our CSP Functional Genomics …
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Better Genome Editing for Bioenergy
… Joint Genome Institute (JGI), a DOE Office of Science User Facility. Y. lipolytica is a tantalizing microbial … if the gene is actually essential. Through the JGI’s  Community Science Program , the scientists thus set out to identify which … of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported under Contract No.  …
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Viruses Reprogram Cells into Different Virocells
… Microbial cells infected by viruses undergo metabolic reprogramming. The Science If it looks like a duck and quacks like a duck, so … in part by the  Facilities Integrating Collaborations for User Science (FICUS) collaborative science initiative … under the Facilities Integrating Collaborations for User Science (FICUS) initiative through an award to MBD and …
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Eelgrass Proves to Be Much Younger Than We Thought
… about 2.5 million years less than previously believed.  The Science Eelgrass, one of the most abundant plants in the … climate. Knowing more about how eelgrass evolved can help inform conservation efforts for at-risk populations. Summary … of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, …
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Enlarging Windows into Understanding Gene Functions
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … His approved proposal through the JGI’s Community Science Program (CSP) focuses on a fungal comparative ENCODE project … multicellular development. “DAP-Seq is the main source of information in the project,” Nagy added. “Since the FUNCODE …
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