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Tracing the Evolution of Shiitake Mushrooms
… Additionally, these fungi play a role in the global  carbon cycle . As decayers, Lentinula fungi access carbon previously locked away in wood, converting it into …
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Tracking the Origins of Methane-Producing Microbes
… Mini-Metagenomics Approach Helps Identify Novel Archaeal Methane … production. They are thought to use billions of tons of the carbon dioxide trapped in biomass each year to do so. As … to have a substantial influence on the global carbon cycle. All methanogenic archaea use one of three pathways …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… symbiotic interactions are difficult to study in the lab. Metagenomics provides new views of these relationships.  … crust, there is a vast ecosystem connected to the global carbon cycle. Archaea are key players in this deep biosphere. They …
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JGI Advisory Committees Code of Conduct
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… microbial metabolism affects the biogeochemical cycling of carbon, nitrogen, and other elements, better understanding … a more systematic picture through single-cell and metagenomic sequencing. A team co-led by Mária Džunková, … the virus in 34 hosts or 26 percent of the single cells. Metagenomics sequencing then allowed the team to ask, for the …
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A novel open-source cultivation system helps establish the first full cycle chemosynthetic symbiosis model system involving the giant ciliate Zoothamnium niveum
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… microorganisms therefore play a critical role in the global carbon cycle, and are of significant interest for their potential … to  Euryarchaeota .  Finding Methane-Making Microbes with Metagenomics  By leveraging metagenomics to sample the …
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Partnerships: Adopt-A-Genome
… some of the latest developments in microbial genomics, metagenomics, and computational biology, and to empower them … datasets encompassing >150,000 isolate genomes, 230,000 metagenome-assembled genomes (MAGs), and 40,000+ metagenomes along with curated environmental- and other …
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An Integrated Dataset to Understand Ecosystem Interaction
… economic value as both biofuel feedstock and their role in carbon sequestration. Poplar trees grow quickly in a variety … soil chemistry offers insights into how these ecosystems cycle nutrients like nitrogen and carbon, as well as … managed through human intervention. By leveraging metagenomics, scientists were able to analyze the DNA of …
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Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain TA1
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Triggering Morel Fruiting
… revealed a striking capability of morel mycelium to acquire carbon from lignocellulosic-abundant matters such as plant litter and to incorporate the assimilated carbon into the soil, reducing the amount of CO2 emissions … system which allows the black morel to complete its lifecycle in an artificial environment. It is particularly …
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Fishing for Novel Cellulose Degraders
… known to be key contributors to the planet’s biogeochemical cycles, but the vast majority remains uncultivated and … program (LDRD) entitled ‘Tackling microbial-mediated plant carbon decomposition using “function-driven” genomics’. …
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