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… plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many … quality genome assemblies for all three grasses. With these datasets, researchers made a pan-genome containing four  B. … are all available on the JGI’s plant portal  Phytozome v13 . Researchers from the following institutions were also …

… bioenergy and environmental objectives. … BS – University of Arkansas, Fayetteville, Chemical Engineering Ph. D. – … NIH K25 Mentored Career Development awardee 1998-2003: NSF Graduate research training fellowship in biomolecular … Northen, T., & Bowen, B. (2015). Analysis of metabolomics datasets with high-performance computing and metabolite …

JGI Director to provide a scientific and technical overview of the JGI. The SAC is chartered to render advice, guidance, … on the effective management and strategic objectives of the JGI. The SAC serves as the Institute's key external advisory panel and advocate of the Institute's strategy, operations, and scientific …

… big the room is.  A new study  published online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach … the collective power of more than 26,000 microbiome datasets, all accessible through the publicly available  …

Maize produces a family of compounds that protects it against infections — using … enzymes. The Science Maize ( Zea mays ) produces a plethora of antibiotics called zealexins. Even though scientists have … produced in every corn variety and protect maize by fending off fungal and microbial infections. Scientists had assumed …

Genome Institute in 2016 and is leading the New Lineages of Life Group. His research is focussed on the discovery of … reveals changing protistan ecology of a temperate dimictic lake. Microbiome . Camargo A. et al. 2023. Identification of mobile genetic elements with geNomad. …

… growing on plants, with fluffy white bolls bursting out of the green pods in every direction. There are 100 million … on cotton production, and the crop’s annual economic impact of $500 billion worldwide underscores its value and … All of these cotton lineages have genomes approximately 2.3 billion bases or Gigabases (Gb) in size, and are hybrids …

Survey of Setaria's natural diversity reveals seed dispersal in … Center (Danforth Center) drove up and down the highways of the continental United States, occasionally pulling over … because they’re very productive even in high heat while C3 crops have become less efficient at photosynthesis, a … hudsonalpha.org. … Reference genome of Setaria viridis … Datasets …

… analyzing the enzymes present in the complex organic matrix of the forest floor, a team of researchers have found that … from their soil samples. This gene expression dataset was particularly important for characterizing fungal … fungal enzymes actually outnumbered bacterial enzymes 3-to-1. Additionally, the fungal enzymes the team found …

… automations for DNA design, assembly and analysis Overview of synthesis products The JGI DNA Synthesis platform enables … CRISPR gRNA design tool  … BOOST provides a suite of tools to automate sequence design for assembly by Gibson, … … BOOST … Synthesis Platform Lead … More Resources … Software Engineers in the Synthetic Biology Informatics Group …

… (CSP) . This includes mass spectrometry-based measurements of primary and secondary metabolites from plants, … The webinar featured  Trent Northen and Ben Bowen of the  JGI Metabolomics Program , along with Jenny … environmental or biological samples (like cell media or lake water) without doing a metabolite extraction? Or are …

… have been elected to the User Executive Committee (UEC) of the U.S. Department of Energy Joint Genome Institute … of Wisconsin-Madison and a co-investigator in the Great Lakes Bioenergy Research Center. Her research focus is … or improving bioinformatics tools that can help with dataset analysis, as well as how they can be shared with and …