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Data Ecosystem
To expand access to integrated data, improve tools and infrastructure as well as … its partnership with NERSC and the DOE Energy Sciences Network (ESNet), the JGI has unique access to both expertise … analyses, such as metabolic modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek to …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep … was  recently reported in Nature Communications. The work was co-led by Victoria Turzynski in Alexander Probst’s …
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Cataloging the Microbes that Manage the Health of River Systems
Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent … Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds … efforts, but also how data integration and sharing could work across platforms. … This work was partially supported …
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Examples: Successful LOIs & Submissions
See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities … symbionts … Elucidation of the gene regulatory networks governing terpenoid-mediated plant environment …
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JGI@25: Studying Sorghum’s Survival Skills
… climate has earned it a place on the JGI’s Flagship Plant Genome roster. Sorghum has an important feature in common … the species. Earlier pan-genomes for other plants, like the soybean relative Glycine max ( 2014 ) and the grass … line is sweeter, taller, and grows more biomass. In ongoing work, JGI and collaborators are continuing to generate …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… 2023 marked a decade since the inception of the flagship internship program between the DOE Joint Genome Institute (JGI) and University of California (UC), … of our long term efforts to contribute towards a diverse workforce and scientific community (working with the JGI) as …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
Survey of Setaria's natural diversity reveals seed dispersal in wild populations for the first time. For years, Elizabeth … Biotechnology and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … a good reason nobody’s done it; it’s a heck of a lot of work. I wouldn’t have done it without the contribution of …
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The Expanding Universe of Methane Metabolisms in Archaea
Metagenome-assembled archaeal genomes provide new insights into an ancient metabolism. Methane is a greenhouse … in the physical sciences in the United States, and is working to address some of the most pressing challenges of …
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Jeremy Schmutz
Mr. Schmutz’s involvement with the DOE Joint Genome Institute dates back to 1997, when he was working for the Stanford Human Genome Center, now the … J et al. 2010. Genome sequence of the palaeopolyploid soybean. Nature 4637278: 178-183. … Thomson Reuters Highly …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… around the country recognize that crop varieties grow best in certain regions. Most plant species have adapted to their … and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … using samples collected at these gardens. Building off this work, researchers at three DOE Bioenergy Research Centers …
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Finding the Fermenters
Harnessing BER-funded data resources, researchers built an … including the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … between the predicted and actual end products. … This work was supported by the United States Department of …
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Igor Grigoriev
Dr. Grigoriev joined the DOE Joint Genome Institute in 2003, following his postdoctoral training at UC Berkeley and work in the pharmaceutical industry. He holds joint …
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