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JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users … contributions of collaborators and users. For example if, by agreement with the collaborator, JGI staff take a lead … page. Use a URL Navigate directly to the proposal info page by using the URL …

Blaby-Haas joined the JGI in 2022 as lead of the Biomolecular … at Berkeley lab. She earned her PhD in Microbiology and Cell Science in 2011 from the University of Florida, working … discovery, design, and engineering. … PhD, Microbiology and Cell Science, University of Florida NIH Postdoctoral …

… threads in the mix. But in the Petri dish, the thin vermicelli-like threads floating delicately above the leaf debris … in the Mangroves The bacterium itself was discovered by Olivier Gros, a marine biology professor at the … level. They amplified, sequenced and assembled the genomes. In parallel, Gros’ lab also used a labeling …

… darwinii are the others. All of these cotton lineages have genomes approximately 2.3 billion bases or Gigabases (Gb) in … crops. Additionally, cotton is almost entirely made up of cellulose and it is a fiber model to understand the … field, growers can easily distinguish the cotton species by traits such as flower color, plant height, or fiber …

… more about their work here in a series of videos produced by JGI Communications & Outreach intern Ashleigh Papp. The … out the short videos highlighting the exciting work done by the 2020 cohort of JGI-UC Merced interns .   by: Ashleigh Papp … Intern: Sidharth Babu (undergraduate) …

… consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental samples and … have adapted to thrive in polar ecosystems. The work by Cavicchioli’s team sheds light on the range of archaeal … growth because they had larger genome sizes and their cells were not observed to associate with host cells. In …

… kill outright, replicating so thoroughly that they lyse the cell — a process called lytic infection. But some viruses … This work,  recently published in  The ISME Journal , by contrast, relied on methods that eschew culturing, … virus had been infecting the cell. The team assembled 130 genomes from their sample — a small proportion of the …

… genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can … and enthusiasts to look deep into more than 100 algal genomes, compare them, and visualize supporting experimental … harnessing algae for bioenergy and the greater bioeconomy. By bringing together publicly available genomic data on …

… plant host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots … office building, its roots are akin to the ground floor lobby. People walking into the lobby have many reasons for … plants (endophytes). These include genes that degrade plant cell walls and break down plant sugars. The results also …

… entities that seek to replicate themselves and spread from cell to cell. Two of the most common forms of MGEs are … and their genetic sequences. The software was created by researchers under the direction of Microbiome Data … Resource (IMG/VR) , now with more than 15 million viral genomes. It was also key to developing the first version of …

Danielle operates the single-cell genomics pipeline for JGI collaborators. This work combines custom flow cytometric analysis, cell sorting, genome amplification, PCR screening, and 16S …

… will be competitive. Q:  Can you elaborate on the single-cell genomics capabilities? A:  EMSL’s capabilities include laser capture microdissection, single cell sorting and nanoPOTs. The JGI’s single cell capabilities range from traditional single cell …