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Genes and genome‐resolved metagenomics reveal the microbial functional make up of Amazon peatlands under geochemical gradients
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Pinning Down a Piece of Photosynthesis
… By studying the structure and function of a cyanobacterial protein, … and cyanobacteria create the air we breathe and the fuel for food webs as they turn carbon dioxide and water into … Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean …
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Emiley Eloe-Fadrosh
… Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research interests in microbial ecology and metagenomics. Her current research focuses on leveraging … samples to identify and characterize genomic information from uncultivated microbes and viruses. Prior to …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… As SIP experiments shed more light on microbial communities than ever before — especially with the prospect of meta-analyses boosted … The U.S. Department of Energy Joint Genome Institute, a DOE Office of … Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE Office of Science …
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Advances and challenges in understanding evolution through genome comparison: meeting report of the European Molecular Biology Organization (EMBO) lecture course “Evolutionary and Comparative Genomics”
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JGI on the 2021 Highly Cited Researchers List
… Congratulations to the 2021 Highly Cited Researchers at the JGI! They are among those recognized by Clarivate Analytics for demonstrating “significant influence in their chosen field or fields through the publication of multiple highly cited papers during the last …
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2024 Progress Report
… The Integrative Genomics Building (IGB) seen above is home to the DOE … (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the IGB. Vision  Lead genomic innovation for a sustainable bioeconomy. Mission  As a U.S. Department …
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Data Ecosystem
… The JGI is leveraging its current partnerships to offer new capabilities and resources to users through a BER data ecosystem.  A data … biology. The collaborations present exciting possibilities for scientific exploration, granting access to diverse … Through its partnership with NERSC and the DOE Energy Sciences Network (ESNet), the JGI has …
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A Sorghum Pangenome Opens More Doors to Discovery
… Leveraging decades of technological development, dozens of reference genomes and thousands of resequenced sorghum varieties, a resource … Development (USAID) also supported the work.   Publication:  Morris, G.P., Harder, A.M., Healey, A.L.  et … Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean …
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An Automated Tool for Assessing Virus Data Quality
… CheckV can help researchers assess virus sequence fragments and data … virus sequences vary widely. In a previous effort, an international consortium recommended specific … limits the ability of researchers to accurately perform functional assessment, host prediction, and phylogenetic …
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Phylogenetic and Functional Analysis of Metagenome Sequence from High-Temperature Archaeal Habitats Demonstrate Linkages between Metabolic Potential and Geochemistry
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is made of … The Science The bacterium SAR324 is unusually cosmopolitan. In the ocean’s North Pacific Subtropical Gyre, microbes … According to Boeuf, 16S rRNA genes are like stamps on packages: Focus only on the stamps, and you might miss the …
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