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Partners
… The JGI leverages its existing partnerships and develops others providing … Energy Research Scientific Computing Center (NERSC) and data infrastructure projects—the DOE Systems Biology Knowledgebase (KBase) and the National …
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An Integrated Dataset to Understand Ecosystem Interaction
… Research yields a comprehensive tree and soil dataset for understanding the dynamic relationship between … is 25 terabytes in size. Resources for genomic sequencing, analysis and characterization were provided by the U.S. … This research was sponsored by the U.S. Department of Energy, Office …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital resource for data … a broad range of activities from proposal intake to publication. Information is also obtained and cross-checked … U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… DAN: All right. Welcome back to Natural Prodcast. I did it. … them are actinobacteria. And so we get a lot of them from databases of organisms, so things like the NRL database - or … unknown. And so we've done the sequence similallity network analysis where we look for other receptors with sequence …
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Protein structure determination using metagenome sequence data
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Strategic Integration of Multiple Bioinformatics Resources for System Level Analysis of Biological Networks
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SoyCSN: Soybean context‐specific network analysis and prediction based on tissue‐specific transcriptome data
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Statistical analysis of feature-based molecular networking results from non-targeted metabolomics data
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Taking Stock of the Known and Unknown Microbial Space
… Metagenomic datasets could help map out microbial diversity hotspots … the microbial diversity we know about, and proposes a path forward to curate and cultivate what is still unknown.  “We … Microbial Genomes & Microbiomes (IMG/M) database. In their analysis, the team found that bacterial isolate genomes …
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DAS Tool for Genome Reconstruction from Metagenomes
… Developing and validating an integrated approach to genome recovery … individual contributions, is key to understanding their ecosystem functions in processes ranging from nutrient cycling … to high (596 genomes) complexity. The environmental datasets included metagenomic data from Crystal Geyser in …
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JGI@25: From Life at the Extremes to Editing Genomes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … past few years they have partnered with JGI’s Microbiome Data Science group led by Nikos Kyrpides , mining the … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V …
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A Community Resource for Secondary Metabolite Researchers
… The Secondary Metabolism Collaboratory encourages user engagement. The … gene clusters (BGCs.) As reported in the recent Database issue of the journal Nucleic Acids Research , … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence …
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