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Plant Microbial Interactions Group
… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … and are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, … including single-cell and spatial transcriptomics barcode-based genetics (RB-TnSeq), and computational genomics to …
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Natural Prodcast Episode 2: The Primer, Part 2
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … so secondary metabolism is throughout nature, except maybe for animals and humans, not as much. You know, we have this … I did want to impress, too, is that secondary metabolism is based on primary metabolism. It’s an evolution of primary …
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A Collaboration to Improve Plant Genome Annotations Across Species
… works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led … plant species. It was developed to improve plant genome annotations at the US Department of Energy (DOE) Joint …
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Bacterial Genome Annotation
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A Sorghum Pangenome Opens More Doors to Discovery
… Leveraging decades of technological development, dozens of reference genomes … and thousands of resequenced sorghum varieties, a resource for breeders and researchers to harness the traits that let … Development (USAID) also supported the work.   Publication:  Morris, G.P., Harder, A.M., Healey, A.L.  et …
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Natural Prodcast Episode 6: Marc Chevrette
… DAN: You’re listening to the US. .Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hi again, and welcome to … Marc was the Head of Experimental Genomics there, before he decided to leave for graduate school and pursue his …
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Genetic Bases of Fungal White Rot Wood Decay Predicted by Phylogenomic Analysis of Correlated Gene-Phenotype Evolution
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PCR and Omics Based Techniques to Study the Diversity, Ecology and Biology of Anaerobic Fungi: Insights, Challenges and Opportunities
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Arachnid relationships based on mitochondrial genomes: Asymmetric nucleotide and amino acid bias affects phylogenetic analyses
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Methodology for Extracting High-Molecular-Weight DNA from Field Collections of Macrofungi
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Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding
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A SNP resource for Douglas-fir: de novotranscriptome assembly and SNP detection and validation
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