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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… Journal publication caps JGI pilot project with fledgling Florida … school scientists. The Florida Everglades evokes images of fanboats skimming over swamps, while alligators peer … able to tell the students that the paper was accepted for publication in a reputable scientific journal. It was …
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Evolution of a Fungal Gene Expression Regulator
… Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. The Science Changing an A, C, T or G in a genome sequence can lead to … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science …
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Natural Prodcast Episode 2: The Primer, Part 2
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural … Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hi, again. This is Dan, and … Episode Transcript … This the second episode of Natural Prodcast, which continues a conversation from the …
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Finding the Fermenters
… Harnessing BER-funded data resources, researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use … process called fermentation. To better understand the range of bacteria and archaea that rely on this form of …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… Understanding the shared genetic toolkit of ancestral and present-day plants The Science In a recent  … to the ecological resistance of plants to the Earth’s ever-changing harsh habitats, thus allowing them to spread across … The work (proposal: award at  https://doi.org/10.46936/10.25585/60001405 ) …
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Webinar: MycoCosm Tutorial
… Learn more about JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics data and comparative … While are still working on finalizing the tree and related publication the tree is still in development and not … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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A Community Resource for Secondary Metabolite Researchers
… The Secondary Metabolism Collaboratory encourages user engagement. The Science In addition to the core set of "primary metabolites"—chemical compounds shared by most … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… A nuanced understanding of peat moss drives insight into carbon … understanding how it responds to higher temperatures and a changing environment is vital to preserving peatlands in the … The work (proposal no. 10.46936/10.25585/60001030) (A.J.S.) conducted by the …
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How Filamentous Fungi Sense Food
… Tracing gene regulatory networks in the model fungus  Neurospora crassa . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to … N. crassa is the model organism for filamentous fungi, all of which contain a wide array of plant cell-wall degrading …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Data Ecosystem
… The JGI is leveraging its current partnerships to offer new capabilities and resources to users … Through its partnership with NERSC and the DOE Energy Sciences Network … to facilitate these efforts. Particular areas of emphasis will be the development of tools and …
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