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A Collaboration to Improve Plant Genome Annotations Across Species
JGI Plant Gene Atlas is a huge updateable transcriptome resource spanning diverse plant species. It was developed to … Centralized databases with large-scale transcriptome projects such as Expression Atlas and PPRD could help with … keep updating the Gene Atlas with curated datasets from CSP projects and aim to improve plant gene function …
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Cultivating Symbiotic Antarctic Microbes
… biosphere), including the global carbon cycle. The JGI is sequencing large numbers of microbes and microbial … Council (DP150100244) and the Australian Antarctic Science program (project 4031). The work conducted by the US … host dependency of Antarctic Nanohaloarchaeota   … From our partners …
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Metabolomics Technology Group
Our lab is using mass spectrometry based metabolite … profiling to provide direct biochemical datasets to improve our understanding of microbial metabolism. Of particular … networks of environmental microbes and how they transform their environment. Research Team    … For further …
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Computationally Classifying Fungal Lifestyles
… in Mycology . This work was enabled in part through  JGI’s  Community Science Program (CSP) , as several approved proposals have contributed toward … supported by the NSF grants  DEB-1354625 and  IOS-1456958 . Sequencing of  Dothideomycetes genomes were conducted as …
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Virus-Microbe Interactions of Mud Island Mangroves
… user facilities. Baker had worked with the JGI through a Community Science Program (CSP) proposal, and Rambo’s research builds on that. “The … his time with the JGI has shaped his post-graduate school plans. “The SCGSR gave me some great insight into my career …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… revisiting a number of notable achievements that showcase our collaborations and capabilities to enable great science … a chemical and biological engineer at the University of California Santa Barbara. So plants don’t break down without a … into biochemical production.    Over time, as these projects have delivered results, they have also snowballed …
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A Plant Root Atlas for Tracking Developmental Trajectories
… datasets. The work was  recently published in the journal  Developmental Cell and provides a community resource that could help researchers track cell … Phytozome and will be available for future single-cell projects.” The Berkeley Lab  Biosciences Area has been …
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Fungus Fuels Tree Growth
… (JGI), a DOE Office of Science User Facility, through its  Community Science Program in order to get  M. elongata and  … as secreted proteins. However,  M. elongata  seems to encourage the plant to have leakier cell walls and weaker … 01 to F. Martin), JGI Community sequencing program project (CSP570, DE-AC02-05CH11231), and National Science Foundation …
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Philympics 2021: Prophage Predictions Perplex Programs
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JGI Announces 2025 New Investigator Portfolio
Yaqi You, Yong Zhang and Zhiping Zhong. (All images courtesy of the researchers) Each year, the JGI searches for novel research projects from PIs who have not led any previously accepted … proposals.  The New Investigator call , part of our  Community Science Program , allows us to work and share our …
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An Integrated Dataset to Understand Ecosystem Interaction
… trees. The data set generated is 25 terabytes in size. Resources for genomic sequencing, analysis and characterization were provided by … metabolomic profiles — combined offers the global research community insights into how these trees adapt to different …
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Igor Grigoriev
Dr. Grigoriev engaged thousands of researchers in genome projects and organized numerous genomics workshops. … Igor … et al (2021) PhycoCosm, a comparative algal genomics resource.  Nucleic Acids Res. 49(D1):D1004-D1011 Swift et al … Miyauchi et al (2020) Large-scale genome sequencing of mycorrhizal fungi provides insights into the …
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