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Computationally Classifying Fungal Lifestyles
… in Mycology . This work was enabled in part through  JGI’s  Community Science Program (CSP) , as several approved proposals have contributed toward … supported by the NSF grants  DEB-1354625 and  IOS-1456958 . Sequencing of  Dothideomycetes genomes were conducted as …
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Virus-Microbe Interactions of Mud Island Mangroves
… user facilities. Baker had worked with the JGI through a Community Science Program (CSP) proposal, and Rambo’s research builds on that. “The … his time with the JGI has shaped his post-graduate school plans. “The SCGSR gave me some great insight into my career …
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Identifying the Microbial Cleanup Crew at a Superfund Site
Analysis reveals the microbial community involved in a bioremediation effort. The Science … populations rely heavily on groundwater as their only source of clean drinking water. Over 90% of the PCE in the … ago. The NRAP site is still being monitored and the team plans to continue collecting data to understand the ERD …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… at Lawrence Berkeley National Laboratory through the Community Science Program . The comparative framework provided by these high … of the  Marchantia pangenome, scientists developed a resource that associates plant’s genetic variants with specific …
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Fungus Fuels Tree Growth
… (JGI), a DOE Office of Science User Facility, through its  Community Science Program in order to get  M. elongata and  … as secreted proteins. However,  M. elongata  seems to encourage the plant to have leakier cell walls and weaker … 01 to F. Martin), JGI Community sequencing program project (CSP570, DE-AC02-05CH11231), and National Science Foundation …
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JGI Announces 2025 New Investigator Portfolio
Yaqi You, Yong Zhang and Zhiping Zhong. (All images courtesy of the researchers) Each year, the JGI searches for novel research projects from PIs who have not led any previously accepted … proposals.  The New Investigator call , part of our  Community Science Program , allows us to work and share our …
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User Executive Committee Charter
JGI User Executive Committee (UEC) represents the JGI user community and is responsible for providing input and advice on JGI policies and practices … feedback and make recommendations on how the JGI Science Programs can best support the user community. Advise the JGI …
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How to Target a Microbial Needle within a Community Haystack
… sequences for members of the microbial world through bulk community sequencing (metagenomics) and single-cell genomics, the vast … DNA could be sequenced. Their protocol,  detailed in the journal  Microbiome , combines multiple techniques and was …
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A Plant Root Atlas for Tracking Developmental Trajectories
… datasets. The work was  recently published in the journal  Developmental Cell and provides a community resource that could help researchers track cell … Phytozome and will be available for future single-cell projects.” The Berkeley Lab  Biosciences Area has been …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… to study both sides of this interaction up close, using RNA sequencing to understand gene expression: one of the first … generate from carbon dioxide they take in. In this way, encouraging this symbiosis could improve the way soils store … candidates for genetic engineering. Our hope is that the community at large will follow that up,” Serrano said.  This …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… to study both sides of this interaction up close, using RNA sequencing to understand gene expression: one of the first … generate from carbon dioxide they take in. In this way, encouraging this symbiosis could improve the way soils store … candidates for genetic engineering. Our hope is that the community at large will follow that up,” Serrano said.  This …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
But not all scientists have the expertise and resources to do DNA design and synthesis work. This is where … has been instrumental in establishing larger-scale research projects in our group. It’s enabled us to accelerate gene, … through the JGI DNA synthesis Community Science Program (CSP) Functional Genomics, the system allows scientists to …
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