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DNA Synthesis Science User Advisory Committee
… Science User Advisory Committee is chartered by the Program Head and report back to them. The Committee is … on the effective management and strategic objectives of the programs. The Committee serves as the Program's key external … scientific relevance and quality. The Committee does not perform management functions nor do they direct the Program's …
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Earth BioGenome Project: Sequencing life for the future of life
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Building Sphagnum Genomic Resources
… carbon cycling impact.   The Science Enabled by the JGI’s Community Science Program (CSP), researchers are developing a number of resources to build up Sphagnum as a plant model system focused … P25111-B22, P26392-B20, and I1628-B22), the JGI (CSP 605), the German Research Foundation (DFG, PE 2147/1-1), …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… a decade since the inception of the flagship internship program between the DOE Joint Genome Institute (JGI) and … of sorts at the Lab. “This project represents part of our long term efforts to contribute towards a diverse workforce and scientific community (working with the JGI) as well as our efforts in …
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Mapping the Earth’s Hidden Fungal Kingdom
… past billion years, fungi have spread quietly throughout our planet. From the deepest ocean floors to Antarctic … Joint Genome Institute (JGI)’s Fungal and Algal Science Program and JGI users have been at the forefront of tackling … is both logistical and analytical. How can the research community systematically sample an ancient, hyperdiverse …
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Data Ecosystem
… its current partnerships to offer new capabilities and resources to users through a BER data ecosystem.  A data ecosystem is a connected resource where data from different organizations is … biology. The collaborations present exciting possibilities for scientific exploration, granting access to diverse …
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Computationally Classifying Fungal Lifestyles
… in Mycology . This work was enabled in part through  JGI’s  Community Science Program (CSP) , as several approved proposals have contributed toward … supported by the NSF grants  DEB-1354625 and  IOS-1456958 . Sequencing of  Dothideomycetes genomes were conducted as …
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A Sorghum Pangenome Opens More Doors to Discovery
… and thousands of resequenced sorghum varieties, a resource for breeders and researchers to harness the traits … benefitted from sequencing resources as part of the Community Science Program of the U.S. Department of Energy … of Energy, the Gates Foundation, the Advanced Research Projects Agency-Energy (ARPA-E) and the United States Agency …
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Webinar: PhycoCosm Tutorial
… tools. Questions and Answers 1.  Q(uestion): Why would your Tree ever differ from NCBI Taxonomy? A(nswer): If you … for the answer provided by Sara 4.  Q(uestion): Are all CSP produced data automatically assembled and run through … A: Combination of: DOE mission relevance Science User community – trying to produce resources for large groups of …
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A Grass Model to Help Improve Giant Miscanthus
… The Science A reference genome sequence and genomic toolkit for the perennial grass Miscanthus sinensis has been … allows Miscanthus to both inform and benefit from breeding programs of related candidate bioenergy feedstock crops such … to novel traits. M. sinensis is a tetraploid, with four sets of chromosomes; the study showed that these sets …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… leaf surface. More specifically, they found that microbial community composition and functional potential varied across … Office of Science’s Biological and Environmental Research program because of its relevance to understanding the … of plants and influence nutrient turnover over the course of a leaf’s life. Additionally, the phyllosphere …
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A Collaboration to Improve Plant Genome Annotations Across Species
… JGI Plant Gene Atlas is a huge updateable transcriptome resource spanning diverse plant species. It was developed to … Centralized databases with large-scale transcriptome projects such as Expression Atlas and PPRD could help with … keep updating the Gene Atlas with curated datasets from CSP projects and aim to improve plant gene function …
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