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… in Mycology . This work was enabled in part through  JGI’s  Community Science Program (CSP) , as several approved proposals have contributed toward … supported by the NSF grants  DEB-1354625 and  IOS-1456958 . Sequencing of  Dothideomycetes genomes were conducted as …

Genome Institute in 2000 as the founding Associate Director for Computational Genomics, and led the computational efforts directed towards the sequencing, annotation, and analysis of three human … Genomics group, and is past lead of the Eukaryotic Genome Program (2010-2019), and JGI Chief Informatics Officer …

Yaqi You, Yong Zhang and Zhiping Zhong. (All images courtesy of the researchers) Each year, the JGI searches for novel research projects from PIs who have not led any previously accepted … proposals.  The New Investigator call , part of our  Community Science Program , allows us to work and share our …

… (JGI), a DOE Office of Science User Facility, through its  Community Science Program in order to get  M. elongata and  … as secreted proteins. However,  M. elongata  seems to encourage the plant to have leakier cell walls and weaker … 01 to F. Martin), JGI Community sequencing program project (CSP570, DE-AC02-05CH11231), and National Science Foundation …

Research in the viral genomics group aims at improving our collective understanding of ecological and evolutionary … overview and major challenges of host prediction methods for uncultivated phages.  Current Opinion in Virology .  49 … 4 , 1895–1906 Roux, S. et al. (2019) Minimum Information about an Uncultivated Virus Genome (MIUViG).  …

Over the course of the summer, the JGI-UC Merced Genomics Internship … effect has your summer internship with the JGI had on your plans to pursue a STEM career?
 Doing the JGI internship has … Mentors: Igor Grigoriev and Asaf Salamov, Fungal and Algal Program What effect has your summer internship with the JGI …

The Science A reference genome sequence and genomic toolkit for the perennial grass Miscanthus sinensis has been … allows Miscanthus to both inform and benefit from breeding programs of related candidate bioenergy feedstock crops such … to novel traits. M. sinensis is a tetraploid, with four sets of chromosomes; the study showed that these sets …

JGI User Executive Committee (UEC) represents the JGI user community and is responsible for providing input and advice on JGI policies and practices … feedback and make recommendations on how the JGI Science Programs can best support the user community. Advise the JGI …

Dr. Grigoriev engaged thousands of researchers in genome projects and organized numerous genomics workshops. … Igor … et al (2021) PhycoCosm, a comparative algal genomics resource.  Nucleic Acids Res. 49(D1):D1004-D1011 Swift et al … Miyauchi et al (2020) Large-scale genome sequencing of mycorrhizal fungi provides insights into the …

… sequences for members of the microbial world through bulk community sequencing (metagenomics) and single-cell genomics, the vast … DNA could be sequenced. Their protocol,  detailed in the journal  Microbiome , combines multiple techniques and was …

… the framework of the Mycorrhizal Genomics Initiative (CSP # 305), Metatranscriptomics of Forest Soil Ecosystems project (CSP # 570) and the 1000 Fungal Genome projects (CSP # 662 & 1974). This research was also … of mutualistic forest-dwelling fungi … Datasets … From our partners …

… to study both sides of this interaction up close, using RNA sequencing to understand gene expression: one of the first … generate from carbon dioxide they take in. In this way, encouraging this symbiosis could improve the way soils store … candidates for genetic engineering. Our hope is that the community at large will follow that up,” Serrano said.  This …