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PhycoCosm Tutorial
Learn more about PhycoCosm, the largest interactive collection of sequenced algal genomes, omics data and comparative analysis tools developed by the Joint Genome Institute (JGI), a US …
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Dispatches From JGI Interns
… summer, the flagship JGI-UC Merced Internship Program invites undergraduate and graduate students to engage in real, impactful research projects with JGI mentors. In this episode, hear two … describe their deep dives into genomics, computational tools, and big data.  …
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JGI-UC Merced Interns Share Their 2021 Experiences
… spent eight weeks working virtually with JGI mentors to investigate rigorous research projects, hone science presentation skills, and … P. hallii Mutant Library … Evaluation of Binning Tools for Microbial Eukaryotes in Metagenomes … Functional …
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A Community Resource for Secondary Metabolite Researchers
The Secondary Metabolism Collaboratory encourages user engagement. The Science In addition to the core set of "primary metabolites"—chemical compounds shared by most living creatures for … using multiple commonly used sequence analysis tools is a means of expediting BGC and biosynthesis …
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David Goodstein
… joining the JGI in 2002. Initially focused on building tools to facilitate expert curation of human gene models in … larger comparative genomic systems as the JGI’s eukaryote research efforts expanded to include basal metazoans and … leads the Plant Comparative Analysis group, and is responsible for genome annotation, comparative analysis and …
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I-Min (Amy) Chen
I-Min A. Chen received her Ph.D. in Computer Science. Her research has been focused on semantic and object-oriented … of the Object-Protocol Model (OPM) data management tools for scientific applications developed at Berkeley Lab. Dr. Chen is currently the Microbiome Computational Resource Lead at the JGI, responsible for the data management …
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MGM Workshop at Fisabio Summer School
Genomics & Metagenomics Workshop The workshop is addressed to students and professionals of biology, biomedical research, the health … fields who are interested in learning and sharing concepts, tools and research results in genomics, metagenomics and the …
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Partnering with CalTeach – Training the Next Generation STEM Workforce
Genome Science” – through early introduction to the resources and disciplines advanced by the JGI, we seek to inspire more students to …
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Game On: High School Students Drive Everglades Metagenomics Study
… project involving soil sampling in the Florida Everglades to help train the next generation of scientists. She shares her thoughts about the experience below. In the summer of … tests for raw data and how to use some bioinformatics tools for analysis to help them focus on what to pull out …
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Simon Roux
Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development of novel computational tools to identify virus sequences, the design of new …
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MGM Workshop at Fisabio Summer School 2025
Register here The workshop is addressed to students and professionals of biology, biomedical research, the health … fields who are interested in learning and sharing concepts, tools and research results in genomics, metagenomics and the …
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Exploring the Diversity of the American Prairie’s Switchgrass
But switchgrass has a complex genome and, as a species, encompasses dizzying diversity. So, a team of scientists made an … to link the plant’s varying traits — height, biomass, hardiness to cold, etc. — to its genes. The undertaking took …
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