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Axel Visel
… and implementation of strategic initiatives at the JGI. Dr. Visel received his Ph.D. in 2004 from the Max … University of California, Merced. Dr. Visel also served as JGI Interim Director from March 2016 – March 2017.   … Axel Visel is the JGI's Deputy for Science Programs. Click to learn more about …
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Year in Review: JGI’s 2018 Progress Report Available Now
… The latest edition of the JGI Progress Report highlights notable research and scientific collaborations in 2018. The cover is an image of … available the annual JGI Genomics of Energy & Environment Meeting in San Francisco …
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Webinar: SIP technologies at EMSL and JGI
… Sciences Laboratory (EMSL) and the Joint Genome Institute (JGI) provide access to a variety of tools that leverage … compounds. During this webinar, EMSL’s Mary Lipton and the JGI’s Rex Malmstrom provided background on the various isotope-related technologies available at JGI and EMSL such as DNA-SIP, Protein SIP, Flux Balance …
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Mindfully Moving JGI
… JGI is in the process of shifting its operations from Walnut … labs in Building 100 were silent. Twenty years after the JGI united the genomics expertise of three national labs in … and then installed at the  Integrative Genomics Building , JGI’s newly-built home located in the heart of the Berkeley …
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JGI Workshops at PAG
… we will present current and ongoing developments at the JGI and KBase toward integrative biology and hear from … We will describe how to apply for a project with the JGI Community Science Program and how you can use the KBase …
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JGI Scientists Pen Genome Watch Articles
… Tanja Woyke and other JGI researchers made their debut writing for the Nature … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… On February 17, 2021, JGI and the Environmental Molecular Sciences Laboratory (EMSL) co-hosted a JGI Engagement: Accessing Resources at Multiple DOE User Facilities with a Single Proposal webinar, inviting … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies
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An Earth Month Look at Sustainability Efforts at the JGI
… a DIY Succulent Workshop and Plant Sale. All year, the JGI helps support finding solutions to clean energy and environmental challenges. And many JGIers work to connect those big goals with their everyday … of that lifecycle, there’s a specific push going on at the JGI — the ZERO Waste Initiative — that works to prepare the …
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JGI@25: Using Team Science to Build Communities Around Data
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number … 29 U.S. states and 35 countries. (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through … genomes in progress and 200 that are pending samples from users. Roughly 300 have been published. Spatafora said the …
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Kjiersten Fagnan
… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, … subsurface flows, and evolved into scalable methods for scientific data analysis. In 2014 Dr. Fagnan became the … Data Collaborative where she leads infrastructure and user-centered design efforts. Dr. Fagnan was on the …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA sequences to aid … vs the ultra-low input library creation protocols for PacBio? A(nswer):  Regular PacBio typically requires ~ … Data analysis Q:  What types of analysis support does JGI provide for DNA modification detection? A:  DNA …
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