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Sequencing Technologies
… sequencing to enable biological discovery by the JGI and external DOE users. Adopting the latest  sequencing technologies has allowed the JGI to increase sequencing output while significantly … hand with the Project Management Office to help ensure the JGI’s genomic capabilities are ready and applicable to …
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Natural Prodcast Episode 19: Bill Fenical
… things I want to make sure that we talk about. You have a JGI project going with us that we want to talk a little bit … people that shaped the field early on. So here we go. So maybe we start with what’s your origin story in natural … So fortunately, the secondary metabolite component of the JGI, people are interested in this area. DAN UDWARY: I know …
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Applying Viral Genomics Expertise to Understanding the Human Virome
JGI researchers lend expertise to develop tools and data hub … that can be compared across studies, (ii) predicting which hosts these viruses are likely to infect, and (iii) … for one field of research can be harnessed elsewhere. In a  2019 paper , the team applied computational methods and …
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Community Science Program
… sequencing, synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  … call is for expansive projects that leverage a range of JGI capabilities, and also requires a Letter of Intent. The New Investigator call is for PIs who have never led a JGI project, and the Functional Genomics call is for …
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Nick Everson
Mr. Everson rejoined the JGI in 2020  and leads all aspects of JGI Operations which include the Safety, Finance, Human … and Administration departments. He previously served as JGI’s Business Manager from 2007 to 2012, overseeing all …
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Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.
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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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Nigel Mouncey
… and today, focuses on continuing to build and position JGI as a leading integrative genome science user facility. In addition to serving as JGI Director, Dr. Mouncey leads his own science group at JGI … Nucleic Acids Res. 48: D422-D430 Wang G et al. 2019. CRAGE enables rapid activation of biosynthetic gene …
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Kjiersten Fagnan
Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, … for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC Engagement Lead with a focus on adapting JGI workloads to run on supercomputing hardware and worked …
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Simon Roux
Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the … to link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the organization … genomes. Nature biotechnology 39, 578-585. Roux et al., 2019. Cryptic inoviruses revealed as pervasive in bacteria …
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Metagenome Program
… viral populations. Enabling microbiome data science:  The JGI supports microbiome data science by enabling comparative … analysis through the IMG/M platform. Further, the JGI partners with the National Microbiome Data Collaborative …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… team discovered that the mat’s viruses specialize to single hosts, and instead of lysing them, which appears to be … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … that the virus is not rapidly replicating, but instead may be abiding in the host genome: the strategy of lysogeny. …
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