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Analyses of expressed sequence tags from the maize foliar pathogen Cercospora zeae-maydis identify novel genes expressed during vegetative, infectious, and reproductive growth
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… in their chosen field or fields through the publication of multiple highly cited papers during the last decade” by … plays in its resiliency, as well as a Nature Plants study identifying colonization patterns in eelgrass . Igor … of strawberries as part of a study to develop a method for identifying polyploid subgenomes without needing to know the …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… viruses outnumber the microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome … which hosts these viruses are likely to infect, and (iii) identifying the genetic traits of the viruses to better … ( Nature Biotechnology , 2021), geNomad , a tool for identifying mobile genetic elements ( Nature Biotechnology , …
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Integrated analysis of homozygous deletions, focal amplifications, and sequence alterations in breast and colorectal cancers
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JGI Portals
… expertise and infrastructure enable a broad community of scientists and engineers to leverage our data to develop new algorithms, models and tools in support of DOE mission priorities. Data discoverability and … for technical help, feedback or a guided walk-through of the new Data Portal.  …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… chemical factories. They hold genetic blueprints for dozens of complex compounds, but stay largely dormant under standard conditions. As described in a recent issue of mSystems , scientists found that adding salt to the … can use to design more efficient microbial factories. Identifying specific genes, regulatory elements and …
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Natural Prodcast Episode 12: Nadine Ziemert
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … about natural products and the science and scientists of secondary metabolism. Welcome back. This will be episode 12 of Natural Prodcast. And it’s our conversation with Nadine …
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How to Target a Microbial Needle within a Community Haystack
… A workflow for capturing the genetic make-up of specific uncultivated microbes from complex environmental … (Berkeley Lab) to develop a process for more easily identifying cells of interest in a complex environmental … a more complete view of a population’s genetic makeup and identifying viruses interacting with these populations. …
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Streamlining Regulon Identification in Bacteria
… with their target genes. The Science Regulons are a group of genes that can be turned on or off by the same regulatory … responses and cellular differentiation. The tough part is identifying the set of genes associated with any particular … and sigma factors. However, currently the process for identifying the particular regulon and target genes …
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The role of zinc in the adaptive evolution of polar phytoplankton
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter scenes that came with crayons in various shades of white. To researchers searching for sequences of RNA … RNA viruses is just the beginning. “I often say that just identifying a sequence as viral is not even half the story.” …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … The planet’s microbial diversity is immense, yet much of it remains unknown. For more than a decade, researchers … around the world have collaborated with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office …
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