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… of Illinois at Urbana-Champaign: Announced in July 2017, CABBI is a collaboration between Illinois’ Institute for … breakthroughs in basic science, and is exploring microbial-based synthesis of fuels beyond ethanol. … The JGI … science.  Projects include de novo generation of genome data, assistance in interpreting and/or building on …

The JGI has a strong interest in seeing that the data produced by the facility result in scientific … assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators and JGI … of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE Office of Science User Facility, is supported by …

To expand access to integrated data, improve tools and infrastructure as well as … analyses, such as metabolic modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek to … data on scales ranging from single genes and individual genomes to metagenomes to systems-level modeling and …

… for capturing the genetic make-up of specific uncultivated microbes from complex environmental samples. The … and then efficiently retrieve and characterize their genomes. The Impact Despite great strides in generating genome sequences for members of the microbial world through bulk community sequencing …

Our research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes … (2022) Giant virus biology and diversity in the era of genome-resolved metagenomics. Nature Reviews Microbiology volume 20, 721–736 JC Villada, F Schulz (2022) The endosymbiotic box of …

A deep dive into microbial genomics reveals one bacterial species is made of … periodically at different depths. In order to determine the genome structure of SAR324 cells and their gene expression, … by grants from the Simons Foundation (#329108 and #721223 to EFD) and Gordon and Betty Moore Foundation grant …

… and dark. But there are hotspots on the ocean floor — underwater volcanoes and hydrothermal vents — where lively microbial communities thrive, and even support entire … Emily St. John, Gilberto Flores, and Peter Girguis about sampling these communities, and understanding how they’ve …

This is the third and final episode of our series on a giant metagenome assembly from Wisconsin’s Lake Mendota. In the last … project. But every part of this project depends on lakewater samples — so this episode is a look at how researchers …

Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program … the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the … dark matter through global metagenomics. Nature . 622(7983):594-602. Camargo AP. et al. (2023) Identification of …

Call. These projects include cutting-edge research into microbial communities — from freshwater estuaries reshaped by dam removal to Antarctica’s photosynthetic mats — to reveal how these systems adapt and contribute to …