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Three Join the JGI User Executive Committee
… been an active user of the JGI at any time in the past two fiscal years is eligible for election to the UEC. Members serve three-year terms and can serve no more than two consecutive terms. …
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Understanding Wildfire Recovery, Starting in Soil
… A metagenomic look at the soil microbes present a year after a wildfire. The Science After a wildfire burns, … using both DNA and messenger RNA (mRNA) sequencing to identify those traits that have helped fungi, bacteria and viruses … that burned at the Colorado-Wyoming border, about a year after the fire. They sampled soil across a variety of …
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Leo Baumgart
… DNA affinity purification sequencing (DAP-seq) to identify in vitro binding sites of potential Novosphingobium aromaticivorans DSM12444 transcription factors." Microbiology Resource … in bacterial gene regulation." Nature methods 18, no. 12 (2021): 1499-1505. Hasty, Jeff, Leo Alexander Baumgart, …
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Secondary Metabolites Program
… genomics, biodesign and metabolomics capabilities to identify, express and characterize bioactive secondary metabolite … Identification by in vitro-sequencing (RIViT-seq) to identify RNA polymerase-sigma factor targets, and have expanded … Report Card toolkit (HERC-tk) to enable users to identify the best host to express their BGC(s). This is based on …
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Exploring Phages at JGI
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Webinar: SIP technologies at EMSL and JGI
… isotopes to measure carbon and nutrient flux, and identify microbes assimilating labeled compounds. During this … We do a hydrolyzation of the DNA and we look and quantify the isotopomers. We estimate the overall atom enrichment … technologies that EMSL could use to target the metabolites. 12. Q:  Can JGI work with labeled RNA?  A:  Not right now …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… of the physical memorabilia that she’s held onto over the years. The DOE brought together the people and resources … the DOE Joint Genome Institute in 1997. Over the next seven years, and in collaboration with researchers at the Stanford … chromosomes. These sequences account for approximately 12% of the total human genome, which itself was finally …
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Mining Metagenomes for Cas Proteins
… aa. They were initially identified by searching for Cas12d homologs across IMG/M’s assembled metagenomic data. It … out that some of these were shorter than the typical Cas12d proteins and were also found next to cas1 genes. Further … the US Department of Energy under contract no. DE-AC02-05CH11231. The work was supported in part by grants from the Paul …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… to contact? A:  Contacts are listed on the proposal call page. Feel free to  reach out to any of them with questions. …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… rapid environmental changes. Researchers were able to identify specific genes that allow the algae to adapt to sudden … more nutrients to fuel growth. The Impact Over the last 40 years, summer sea ice in the Arctic has decreased by more … dead cells recorded. Samples were taken again at two, six, 12 and 24 hours. By the 24-hour mark, these algae showed …
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iPHoP: A Matchmaker for Phages and their Hosts
… Program awarded under UC-DOE Prime Contract DE-AC02-05CH11231. The work conducted by the U.S. Department of Energy … of Energy operated under Contract No. DE-AC02-05CH11231 (SR, APC, SN).  …
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JGI-UC Merced Interns Share Their 2021 Experiences
… returned to re-engage with their mentors from the previous year and continue working on their research project! The …
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