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Toasting to the 2020 JGI-UC Merced Summer Internship Program
… with each intern’s interests or educational goals.  This year’s internship program was remote in its entirety due to … of our work,” said Nigel Mouncey, JGI Director. “This year is unlike any other year, but we’ve had another successful year. I was so …
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Crysten Blaby-Haas
… She earned her PhD in Microbiology and Cell Science in 2011 from the University of Florida, working with Valérie de … and reverse genetics to test those hypotheses. From 2011 – 2015, she worked with Sabeeha Merchant at UCLA as a NIH … S, Blaby-Haas CE, Friedrich T, Daldal F, Koch H. (2019) The  cbb 3-type cytochrome oxidase assembly factor …
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Nikos Kyrpides
… combined Microbial Genomes and Metagenomes Program since 2011. Prior to joining the DOE Joint Genome Institute, Dr. … global metagenomics. Nature . 578:432-436 Roux S. et al. 2019. Cryptic inoviruses are pervasive in bacteria and … across Earth’s biomes. Nature 4:1895-1906 Sberro H. et al. 2019 Large-Scale Analyses of Human Microbiomes Reveal …
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Three Join the JGI User Executive Committee
… been an active user of the JGI at any time in the past two fiscal years is eligible for election to the UEC. Members serve three-year terms and can serve no more than two consecutive terms. …
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Matt Blow
… regulation. Nature methods 18 (12), 1499-1505 Shulse et al. 2019. Engineered Root Bacteria Release Plant-Available …
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Understanding Wildfire Recovery, Starting in Soil
… A metagenomic look at the soil microbes present a year after a wildfire. The Science After a wildfire burns, … using both DNA and messenger RNA (mRNA) sequencing to identify those traits that have helped fungi, bacteria and viruses … that burned at the Colorado-Wyoming border, about a year after the fire. They sampled soil across a variety of …
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JGI Workshops at PAG
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Secondary Metabolites Program
… genomics, biodesign and metabolomics capabilities to identify, express and characterize bioactive secondary metabolite … Identification by in vitro-sequencing (RIViT-seq) to identify RNA polymerase-sigma factor targets, and have expanded … Report Card toolkit (HERC-tk) to enable users to identify the best host to express their BGC(s). This is based on …
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Webinar: SIP technologies at EMSL and JGI
… isotopes to measure carbon and nutrient flux, and identify microbes assimilating labeled compounds. During this … We do a hydrolyzation of the DNA and we look and quantify the isotopomers. We estimate the overall atom enrichment … true. The more the label we have, the better we can see it. 11. Q: Since Jim Moran was able to identify the major …
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Exploring Phages at JGI
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… to contact? A:  Contacts are listed on the proposal call page. Feel free to  reach out to any of them with questions. …
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iPHoP: A Matchmaker for Phages and their Hosts
… Program awarded under UC-DOE Prime Contract DE-AC02-05CH11231. The work conducted by the U.S. Department of Energy … of Energy operated under Contract No. DE-AC02-05CH11231 (SR, APC, SN).  …
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